BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF08FM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1114 1562 0.0
>3x_Contig1114
Length = 6488
Score = 1562 bits (788), Expect = 0.0
Identities = 823/832 (98%), Gaps = 2/832 (0%)
Strand = Plus / Minus
Query: 91 ttaaatcaagtccatcgattaaaagagagatgggatagtctagtggaaagtgcaaagcag 150
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 ttaaatcaagtaaatcgattaaaagagagatgggatagtctagtggaaagtgcaaagcag 4523
Query: 151 aagaggaatcaacagcaagcataagtatgtattgctttaaagtatatcttaatcgttctt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4522 aagaggaatcaacagcaagcataagtatgtattgctttaaagtatatcttaatcgttctt 4463
Query: 211 gttattttaatgcacaatttttgatgatttcgattaactatttgaagggagaaattatat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 gttattttaatgcacaatttttgatgatttcgattaactatttgaagggagaaattatat 4403
Query: 271 agtacaaacagacctccattcctctatttagccttgagcccgtgcataatctcttcctta 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 agtacaaacagacctccattcctctatttagccttgagcccgtgcataatctcttcctta 4343
Query: 331 gtgattagatgaccgatggtttcaatatggtctagtaattgatccacatttgccgaccat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342 gtgattagatgaccgatggtttcaatatggtctagtaattgatccacatttgccgaccat 4283
Query: 391 tcgttgagcagatcactagagttgtttggcttaccaaagttcacaatcttttcaggtcta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 tcgttgagcagatcactagagttgtttggcttaccaaagttcacaatcttttcaggtcta 4223
Query: 451 tttatctttgcgtaaatgataccctggttgaccaaatcactgataaacgactctgtcttg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 tttatctttgcgtaaatgataccctggttgaccaaatcactgataaacgactctgtcttg 4163
Query: 511 gcctcatctaaatctaatagctcctttaaccttggcaaagtaatttttgtatagtatttg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 gcctcatctaaatctaatagctcctttaaccttggcaaagtaatttttgtatagtatttg 4103
Query: 571 gaaatgacacgcaagttgtgctctatgattctcttatgaagatcttcccagtgtgattca 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4102 gaaatgacacgcaagttgtgctctatgattctcttatgaagatcttcccagtgtgattca 4043
Query: 631 ttagacccgaatgcaacgccgtcctggttcaaaatttctttgtaggtatcttgtactatt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4042 ttagacccgaatgcaacgccgtcctggttcaaaatttctttgtaggtatcttgtactatt 3983
Query: 691 ggccatctcattagttctgctgtggtgaagagttttaccaaggattcttgggatggcaat 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 ggccatctcattagttctgctgtggtgaagagttttaccaaggattcttgggatggcaat 3923
Query: 751 ttctttagattgttgtccaactgaaccttgtgaatgagatcattttgtaggttatcatat 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 ttctttagattgttgtccaactgaaccttgtgaatgagatcattttgtaggttatcatat 3863
Query: 811 ggcgatagaatcaagaagtatacaaccctggatagacctgccctccattgaatttcatct 870
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 3862 ggcgatagaatcaagaagtatacaaccctggatagagctgccttccattgaatttcatct 3803
Query: 871 gccttcacag-atcagaggtggagatttcttgg-agtactgagccccttcta 920
|||||||||| ||||||| || ||||||||||| ||||||||||| ||||||
Sbjct: 3802 gccttcacagaatcagagttgtagatttcttggtagtactgagccacttcta 3751
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7020
Number of Sequences: 1807
Number of extensions: 7020
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)