BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF08RM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 1556 0.0
>3x_Contig1444
Length = 7580
Score = 1556 bits (785), Expect = 0.0
Identities = 843/856 (98%), Gaps = 5/856 (0%)
Strand = Plus / Plus
Query: 46 cttcgacaatgcatcattcaaaaagaaagtcattcggccatactcatcggtcctcgatcc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 cttcgacaatgcatcattcaaaaagaaagtcattcggccatactcatcggtcctcgatcc 4194
Query: 106 aattataaagatatgataataaagcatcatttggaggctttaagatcgacacacaacgaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4195 aattataaagatatgataataaagcatcatttggaggctttaagatcgacacacaacgaa 4254
Query: 166 caattcattgttatcaacttaaatggctctttacattcggaaaactctgcaattaacagt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4255 caattcattgttatcaacttaaatggctctttacattcggaaaactctgcaattaacagt 4314
Query: 226 attgctgaacaattagaattcgaacttgcaaacagaaacgttaattcatcaaaaaaagtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4315 attgctgaacaattagaattcgaacttgcaaacagaaacgttaattcatcaaaaaaagtt 4374
Query: 286 aaagcagaagaattaggtttatctgaaggtactttgacagaagtctttgataacattcta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4375 aaagcagaagaattaggtttatctgaaggtactttgacagaagtctttgataacattcta 4434
Query: 346 agattgttggactcatttactgtgactcctctaaagggtgtacactcacagaaagaaaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4435 agattgttggactcatttactgtgactcctctaaagggtgtacactcacagaaagaaaaa 4494
Query: 406 tcagagcacgtaacgctagtgttcatatttgatgaaattgacaaatttgctggaccagtg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4495 tcagagcacgtaacgctagtgttcatatttgatgaaattgacaaatttgctggaccagtg 4554
Query: 466 agacagacacttttgtataatttatttgacctagtagagacttcaaggataccagtttgt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4555 agacagacacttttgtataatttatttgacctagtagagacttcaaggataccagtttgt 4614
Query: 526 gttcttggtcttactacaaagttggcaatcatgcaatttcttgaaaacagagtgaaatcc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4615 gttcttggtcttactacaaagttggcaatcatgcaatttcttgaaaacagagtgaaatcc 4674
Query: 586 cggttttctcagcgaatcatatatatgccatcaatctcggattatgatcaattcaagcat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4675 cggttttctcagcgaatcatatatatgccatcaatctcggattatgatcaattcaagcat 4734
Query: 646 gtattcaaagagctcttagaggtggatgattcaacaattcctgatcagcttcgatgggac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4735 gtattcaaagagctcttagaggtggatgattcaacaattcctgatcagcttcgatggaac 4794
Query: 706 cangttcttggatgagactttaaaaaatgacgattcagagatttctcgtattctgcgtca 765
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4795 ca-gttcttggatgagactttaaaaaatgacgattcagagatttctcgtattctgcgtca 4853
Query: 766 gaactacgagaacttcanagatatatcactatttacaaacgccctatttcccacagttgc 825
||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||
Sbjct: 4854 gaactacgagaacttcaaagatatacaactattacaaaacgccatatttcccacagttg- 4912
Query: 826 ccttgtct-aaacatattctgaactagttgagagcatc-aaacatgcagcaaaat-aaaa 882
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 4913 ccttgtctaaaacatattctgaactagttgagagcatcaaaacatgcagcaaaataaaaa 4972
Query: 883 agtacttggcgaatca 898
||||||||||||||||
Sbjct: 4973 agtacttggcgaatca 4988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8528
Number of Sequences: 1807
Number of extensions: 8528
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)