BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF09FM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1485 0.0
>3x_Contig1751
Length = 24682
Score = 1485 bits (749), Expect = 0.0
Identities = 833/848 (98%), Gaps = 10/848 (1%)
Strand = Plus / Minus
Query: 85 catcgactctggatccattcaaagagttacattgcaaataatcataagttgcaactctta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24165 catcgactctggatccattcaaagagttacattgcaaataatcataagttgcaactctta 24106
Query: 145 aatcaacattatcagctgcagagtaaccaacagggatagatctattggagtgcttttcga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105 aatcaacattatcagctgcagagtaaccaacagggatagatctattggagtgcttttcga 24046
Query: 205 tatattgtttcatatctctttgcacagctctgatataaggagggtcgatctcagcataat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24045 tatattgtttcatatctctttgcacagctctgatataaggagggtcgatctcagcataat 23986
Query: 265 cttcatcgtcattaataatttcattaccggaaaagaaaccaataacgtttggatagttct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23985 cttcatcgtcattaataatttcattaccggaaaagaaaccaataacgtttggatagttct 23926
Query: 325 tgaatgcttcaataaatttgaacacacgctccaaatagtaatctttgtatgaaccgcttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23925 tgaatgcttcaataaatttgaacacacgctccaaatagtaatctttgtatgaaccgcttg 23866
Query: 385 ggtcagctctgttcaaactttcaccccattcaccagagtttacatctaaaataacataga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23865 ggtcagctctgttcaaactttcaccccattcaccagagtttacatctaaaataacataga 23806
Query: 445 taccggcattgtttaaaatcgtcatacatttatcatgatttaaatctgggttcaaagaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23805 taccggcattgtttaaaatcgtcatacatttatcatgatttaaatctgggttcaaagaat 23746
Query: 505 agattctgatcgtgttgattcccaattgttggaatacaaaagcgtccctagcacataact 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23745 agattctgatcgtgttgattcccaattgttggaatacaaaagcgtccctagcacataact 23686
Query: 565 cttcatccgttaaagcatccttgcccgatttcgaactatatgacgaagaaccgcctggtt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23685 cttcatccgttaaagcatccttgcccgatttcgaactatatgacgaagaaccgcctggtt 23626
Query: 625 gataatcaatacctctaacaaaaaacactgtgttatcactagcatcattttttggagaag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23625 gataatcaatacctctaacaaaaaacactgtgttatcactagcatcattttttggagaag 23566
Query: 685 atggttgaataaatctaccacctttggtatgaattggc-acaatgcgtcaactaatgagc 743
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 23565 atggttgaataaatctaccacctttggtatgaattggcaacaatgcgtcaactaatgagc 23506
Query: 744 ttg-aatcaaagcactcaataaaatagaaggaag-accatgtttttattgtttgatttat 801
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 23505 ttgaaatcaaagcactcaataaaatagaaggaagaaccatgtttttattgtttgatttat 23446
Query: 802 ttttcgna-tacgtcggtagtgtggtttagcgttgctcttttc-tttgctaag-atacgc 858
|||||| | ||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct: 23445 ttttcgtattacgtcggtagtgtgttttagcgttgctcttttcttttgctaagaatacgc 23386
Query: 859 gctgattaa-ggcaattaaacgagtgcaatg-attcaaa-tttatgaaa-aaactaagag 914
||||||||| | |||| |||||||||||||| || |||| ||||||||| ||||||||||
Sbjct: 23385 gctgattaatgtcaataaaacgagtgcaatgtatccaaagtttatgaaataaactaagag 23326
Query: 915 ctttctta 922
||||||||
Sbjct: 23325 ctttctta 23318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7592
Number of Sequences: 1807
Number of extensions: 7592
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)