BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF09RM1.SCF screened BAC_end
(1027 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig742 1659 0.0
>3x_Contig742
Length = 2433
Score = 1659 bits (837), Expect = 0.0
Identities = 906/920 (98%), Gaps = 8/920 (0%)
Strand = Plus / Minus
Query: 39 aagcttcagaaaggtagaattagacaacctttgattcagattatatctataatgatcttt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 aagcttcagaaaggtagaattagacaacctttgattcagattatatctataatgatcttt 1049
Query: 99 gggcttggaagactattttacgttgttttattgctgattaattccatcgccgttttgagt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 gggcttggaagactattttacgttgttttattgctgattaattccatcgccgttttgagt 989
Query: 159 gaagaaaggttcctaaggagaagtatgtttataagatcctgagaaaagtttcgaccagac 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gaagaaaggttcctaaggagaagtatgtttataagatcctgagaaaagtttcgaccagac 929
Query: 219 cagaatacagctaatataagcttgaataataattactaaccagaaactaccacacaccat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 cagaatacagctaatataagcttgaataataattactaaccagaaactaccacacaccat 869
Query: 279 tatttaccagttggacttggatcacaatcaaatcaagccgtctttggccaacaagaaaat 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tatttaccagttggacttggatcacaatcaaatcaagccgtctttggccaacaagaaaat 809
Query: 339 accacgaaatctaaactagtacagttgattggcgcagtacaaacattgttaagaagtatg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 accacgaaatctaaactagtacagttgattggcgcagtacaaacattgttaagaagtatg 749
Query: 399 ttcactttagttcgtttcaggtgtcagtaacatgcactgcaatggtgattctaccatttc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttcactttagttcgtttcaggtgtcagtaacatgcactgcaatggtgattctaccatttc 689
Query: 459 accccttacaattgctgagttttactaactaatgattaatttcaaccttttattacagtc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 accccttacaattgctgagttttactaactaatgattaatttcaaccttttattacagtc 629
Query: 519 ccactaatcggtattaacattctcgtgataatatacgaagtccttctaggttgaaatagc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccactaatcggtattaacattctcgtgataatatacgaagtccttctaggttgaaatagc 569
Query: 579 acatatacgcagattatgtacaataaatagagatagttcggaatatcaataacttatact 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acatatacgcagattatgtacaataaatagagatagttcggaatatcaataacttatact 509
Query: 639 ggtggcaatttaggtttatcatgatgctggttgtattgcttatcactattataaaacaat 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggtggcaatttaggtttatcatgatgctggttgtattgcttatcactattataaaacaat 449
Query: 699 tatttaaagtttccatcaatgtcctttcaacttcgtgatggtgggaaatatccac-aaaa 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 448 tatttaaagtttccatcaatgtcctttcaacttcgtgatggtgggaaatatccacaaaaa 389
Query: 758 gaaaatagaa-atcaaggaagcttaagaa--ggtaaagcgagtgaattgaatggtatgtc 814
|||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 388 gaaaatagaatatcaaggaagc-taagaaagggtaaagcgagtgaattgaatggtatgtc 330
Query: 815 attatggttaggcgagcatcagttgctttgttggtgtttgacagcacttgatgttgta-t 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 329 attatggttaggcgagcatcagttgctttgttggtgtttgacagcacttgatgttgtatt 270
Query: 874 ttgagcagcgagattgtttgcattttatatcggtttc-aaacgatggatt-agacttgct 931
|||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||
Sbjct: 269 ttgagcagcgagattgtttgcattctatatcgctttcaaaacgatggattcagacttgct 210
Query: 932 tgacctcatttacttttccg 951
| ||||||||| ||||||
Sbjct: 209 gtagctcatttacctttccg 190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7560
Number of Sequences: 1807
Number of extensions: 7560
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1027
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1011
effective length of database: 10,329,639
effective search space: 10443265029
effective search space used: 10443265029
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)