BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF10RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig328 1681 0.0
3x_Contig6 646 0.0
>3x_Contig328
Length = 2419
Score = 1681 bits (848), Expect = 0.0
Identities = 926/944 (98%), Gaps = 9/944 (0%)
Strand = Plus / Plus
Query: 46 ctttgatttccgttcagggaatgacttgcggcgcctgtgtcaaaaccgttcaaacacaag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 ctttgatttccgttcagggaatgacttgcggcgcctgtgtcaaaaccgttcaaacacaag 1133
Query: 106 ttggaaatgttgatggtgtcactgagtgtgaggtgtctttgttgacagaagaatgtcatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 ttggaaatgttgatggtgtcactgagtgtgaggtgtctttgttgacagaagaatgtcatg 1193
Query: 166 tcctttttgataaaggacgtactaccacatctgaaatattggaaacaatagatgagtgtg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 tcctttttgataaaggacgtactaccacatctgaaatattggaaacaatagatgagtgtg 1253
Query: 226 ggtttgatggtagcttaatttctgaggaaccgctagattacgatgtgacaacaactgaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 ggtttgatggtagcttaatttctgaggaaccgctagattacgatgtgacaacaactgaac 1313
Query: 286 aaatttcagggattcttctcgttagcggtatgacgtgtggtgcttgcgtgaaaactgtca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 aaatttcagggattcttctcgttagcggtatgacgtgtggtgcttgcgtgaaaactgtca 1373
Query: 346 ctggtcaagtattgaaactaagcggtgtattggaatgtgacgtatctttagttacagaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 ctggtcaagtattgaaactaagcggtgtattggaatgtgacgtatctttagttacagaag 1433
Query: 406 agtgcaaagttaagttcgatccccatttcacttcgatggctgaaattgccgaatgtattg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 agtgcaaagttaagttcgatccccatttcacttcgatggctgaaattgccgaatgtattg 1493
Query: 466 atgattgtgggtttgatgccaaagtcattagtgagaactcaagctctgtacctagcaacg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 atgattgtgggtttgatgccaaagtcattagtgagaactcaagctctgtacctagcaacg 1553
Query: 526 aaaagcgtttgtgcttaaaaatattcggtatgttgtctgaatcggatagggccgatatcg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 aaaagcgtttgtgcttaaaaatattcggtatgttgtctgaatcggatagggccgatatcg 1613
Query: 586 agtcaaaagtttctgagttgaaaggtgtgatatctatcgatacttcattgcaaagtgaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 agtcaaaagtttctgagttgaaaggtgtgatatctatcgatacttcattgcaaagtgaag 1673
Query: 646 aggcaacagtcatccatgatgctaacgagatcggaaaccgtgatatcatagactgtatcg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 aggcaacagtcatccatgatgctaacgagatcggaaaccgtgatatcatagactgtatcg 1733
Query: 706 aagagatggggtttcaaacttttatttcaaatacattggataattctacacaattatcat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 aagagatggggtttcaaacttttatttcaaatacattggataattctacacaattatcat 1793
Query: 766 tactctctaaaactaaagaaatccaattctggaagaagaatngtataagaggtggtattt 825
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1794 tactctctaaaactaaagaaatccaattctggaagaagaattgtataagaggtggtattt 1853
Query: 826 cttctattctaat-atggggntgtacatgtgtgtaccgatgcttgtcccagctgtgttga 884
||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 1854 cttctattctaataatggggttgtacatgtgtgtaccgatgctgttcccagctgtgttga 1913
Query: 885 ctcattt-ccattcgtacaaacacca--ttttggcttggtttat-gagat-ttatcggga 939
||||||| |||||||||||||||||| | |||||||| ||||| ||||| | ||||| |
Sbjct: 1914 ctcatttcccattcgtacaaacaccaattattggcttgttttatagagatatcatcggaa 1973
Query: 940 -tatcattactacctacgttcaa--ttatgttggttcctatttt 980
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1974 ttatcattactacctacgttcaaatctatgttggttcctatttt 2017
>3x_Contig6
Length = 951
Score = 646 bits (326), Expect = 0.0
Identities = 359/370 (97%)
Strand = Plus / Plus
Query: 422 cgatccccatttcacttcgatggctgaaattgccgaatgtattgatgattgtgggtttga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgatccccatttcacttcgatggctgaaattgccgaatgtattgatgattgtgggtttga 60
Query: 482 tgccaaagtcattagtgagaactcaagctctgtacctagcaacgaaaagcgtttgtgctt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgccaaagtcattagtgagaactcaagctctgtacctagcaacgaaaagcgtttgtgctt 120
Query: 542 aaaaatattcggtatgttgtctgaatcggatagggccgatatcgagtcaaaagtttctga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaatattcggtatgttgtctgaatcggatagggccgatatcgagtcaaaagtttctga 180
Query: 602 gttgaaaggtgtgatatctatcgatacttcattgcaaagtgaagaggcaacagtcatcca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttgaaaggtgtgatatctatcgatacttcattgcaaagtgaagaggcaacagtcatcca 240
Query: 662 tgatgctaacgagatcggaaaccgtgatatcatagactgtatcgaagagatggggtttca 721
||||||||||||||||||||||||||||||||||||||||||| || | || |||||
Sbjct: 241 tgatgctaacgagatcggaaaccgtgatatcatagactgtatctaatatattttttttca 300
Query: 722 aacttttatttcaaatacattggataattctacacaattatcattactctctaaaactaa 781
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 301 aacttttatttcaaatacattttataattctacacaattatcattactctttaaaactaa 360
Query: 782 agaaatccaa 791
| ||||||||
Sbjct: 361 ataaatccaa 370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6827
Number of Sequences: 1807
Number of extensions: 6827
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)