BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF11FM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1251 0.0
>3x_Contig1509
Length = 8584
Score = 1251 bits (631), Expect = 0.0
Identities = 668/679 (98%), Gaps = 1/679 (0%)
Strand = Plus / Plus
Query: 88 attcactctccctttggagattgtcactaagttcaataattatgtgtaatcatcgtttaa 147
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 attcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgtttaa 7120
Query: 148 tatgtagaaataaaatatctatacttcacttttttttcaagctcgctgtttgtcttcatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 tatgtagaaataaaatatctatacttcacttttttttcaagctcgctgtttgtcttcatt 7180
Query: 208 cgatattatctttgatgtgctttatcgatttcaatgaactagagtcgattagctgtaaga 267
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7181 cgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgtaaga 7240
Query: 268 gtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgagatttt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7241 gtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgagatttt 7300
Query: 328 gagccagttctttccattccatttggatctcatctcgccattgtctcagttccacaacgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301 gagccagttctttccattccatttggatctcatctcgccattgtctcagttccacaacgg 7360
Query: 388 ataacatggaattgatatcctggtaattaacatcagtatttgttgcacttcgtataagct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7361 ataacatggaattgatatcctggtaattaacatcagtatttgttgcacttcgtataagct 7420
Query: 448 caatggctctgcatttttcgattagtcttgtccttaaagagtcatacttatgtaggagac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7421 caatggctctgcatttttcgattagtcttgtccttaaagagtcatacttatgtaggagac 7480
Query: 508 tttgatccatttcattttcattatcgataagtctgaatctaggtaggttggctagatcac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7481 tttgatccatttcattttcattatcgataagtctgaatctaggtaggttggctagatcac 7540
Query: 568 tgtgtaacttgggaaaactaactccatctccgttcaacatatttcccaaatctagacgtt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7541 tgtgtaacttgggaaaactaactccatctccgttcaacatatttcccaaatctagacgtt 7600
Query: 628 gttaatcaccgatatttgtcaagacatcatagtattcattttcgtttccaatcatctata 687
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7601 gtaaatcaccgatatttgtcaagacatcatagtattca-tttcgtttccaatcatctata 7659
Query: 688 tattcgactagctctttcttcaatatattgtagttcacataatacttcagtgcattgacc 747
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct: 7660 tattcgactagctctttcttcaatatatcgtagttcacatcatacttcagtgcattgtcc 7719
Query: 748 agtcttggttgttggtcat 766
| ||||| |||||| ||||
Sbjct: 7720 aatcttgcttgttgttcat 7738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7618
Number of Sequences: 1807
Number of extensions: 7618
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)