BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF11RM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 1649 0.0
>3x_Contig1145
Length = 5226
Score = 1649 bits (832), Expect = 0.0
Identities = 899/917 (98%), Gaps = 4/917 (0%)
Strand = Plus / Minus
Query: 45 cttgcggatttcgttacgtctggtgagtgtatgatatcaataaaatatggatctggaatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146 cttgcggatttcgttacgtctggtgagtgtatgatatcaataaaatatggatctggaatt 3087
Query: 105 tgcatcagcggagataataaaccagtaaaccatgcatccaacgatatggataggaaatta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086 tgcatcagcggagataataaaccagtaaaccatgcatccaacgatatggataggaaatta 3027
Query: 165 taaataaattcagtattattagctctccatacaccctgtataccttctttatccataatt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 taaataaattcagtattattagctctccatacaccctgtataccttctttatccataata 2967
Query: 225 ctgtttaaaatatcaatggtatggatgcttgcaggtttgattaaggtaccattctcatca 284
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 ctgtttaatatatcaatggtatggatgcttgcaggtttgattaaggtaccattctcatca 2907
Query: 285 gcaacgccttgttcctcctttgctgctctttcaatcagattggcttgtgactcattgacg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 gcaacgccttgttcctcctttgctgctctttcaatcagattggcttgtgactcattgacg 2847
Query: 345 aagaagtttggctcggcttcgtcatcgtcatcatcttcaaattcatggttgtcattaaca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 aagaagtttggctcggcttcgtcatcgtcatcatcttcaaattcatggttgtcattaaca 2787
Query: 405 ttatcattatcattatagtaggctgatttattgccatctgtaaggtaatcaaagtcacct 464
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2786 ttatcattatcattatagtaggctgatttattgccatctgtgaggtaatcaaagtcacct 2727
Query: 465 acttgcaaaagcaactttgcaatttcgaatggttggcgaattaaatgctggaagtatttt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 acttgcaaaagcaactttgcaatttcgaatggttggcgaattaaatgctggaagtatttt 2667
Query: 525 gaggatagctgcctaagcaacctttcaagaaggtgtctccatacattcacgttgataaaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 gaggatagctgcctaagcaacctttcaagaaggtgtctccatacattcacgttgataaaa 2607
Query: 585 tcattccattcaagatcgttaagggatttggcattattaccgtgtttggagttcatgatt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 tcattccattcaagatcgttaagggatttggcattattaccgtgtttggagttcatgatt 2547
Query: 645 ccatgaagaaatttgtttttgagaccagtggttaactcagttaaggtgttaccacctgat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 ccatgaagaaatttgtttttgagaccagtggttaactcagttaaggtgttaccacctgat 2487
Query: 705 aaacttctattaagcgacttcaagccgctgcccaccgattgatttactattgttaactta 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 aaacttctattaagcgacttcaagccgctgcccaccgattgatttactattgttaactta 2427
Query: 765 gaggcgatattcagaccgttttggtcgatgacacctttgtcattctgaaatactgctgaa 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 gaggcgatattcagaccgttttggtcgatgacacctttgtcattctgaaatactgctgaa 2367
Query: 825 t-accaacattgaaagtctttggatcatagtacggacgtaagatggatgaatctttgaat 883
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 2366 taaccaacattgaaagtctctggatcatagtacggacgtaggatggatgaatctttg-at 2308
Query: 884 ct-ctccattttcaacactccgaa-gttgctntttgaagntctttcttccctggttactc 941
|| ||||||||||||||||||||| |||||| ||||||| ||||||| || || | ||||
Sbjct: 2307 ctcctccattttcaacactccgaatgttgctttttgaagttctttctcccttgttaactc 2248
Query: 942 gccaaangtttttattg 958
|||| ||||||||||
Sbjct: 2247 gccatcagtttttattg 2231
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8356
Number of Sequences: 1807
Number of extensions: 8356
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)