BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF12FM1.SCF screened BAC_end
(1009 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1662 1160 0.0
>3x_Contig1662
Length = 14890
Score = 1160 bits (585), Expect = 0.0
Identities = 685/712 (96%), Gaps = 5/712 (0%)
Strand = Plus / Plus
Query: 93 tctgttttcaccgaaggcgaagatatgaccgaattgagagtcagagaatgaatggatacc 152
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tctgttttcaccgaag-cgaagatatgaccgaattgagagtcagagaatgaatggatacc 77
Query: 153 accattattaccaacagagaaataacttttttcgttggaagatgaacggaagttcaattc 212
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 78 accattattaccaacagagaaataaccccaaacgttggaagaagaacggaagttcaattc 137
Query: 213 gtgtaaagcacctttcagatgnatt-aaaccctcatttgtatcttcggatgtgatacggc 271
|||||||||||| |||||| || ||||||||||||| ||||||||||||||||||||
Sbjct: 138 gtgtaaagcaccgc-cagatggtttgaaaccctcatttggatcttcggatgtgatacggc 196
Query: 272 atgcagtacagtgacctttaggagttggttttctttgagttttagcagactcaggtgtag 331
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aggcagtacagtgacctttaggagttggttttctttgagttttagcagactcaggtgtag 256
Query: 332 agaagttaaagtcaatttcggatgcagattttggatcgacaccgtataacaatctaatat 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaagttaaagtcaatttcggatgcagattttggatcgacaccgtataacaatctaatat 316
Query: 392 ctctgattctgtgcattggaatacccatagcgatttgtaactgggcagacggcaagttaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctctgattctgtgcattggaatacccatagcgatttgtaactgggcagacggcaagttaa 376
Query: 452 caccagtaaccatttctgtggttggatgttcaacttgtaatcttgggttcaactccaaga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caccagtaaccatttctgtggttggatgttcaacttgtaatcttgggttcaactccaaga 436
Query: 512 agtagaacttgtcttcatcatgagaatataaatattcgacggtaccagcagaaacgtaac 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtagaacttgtcttcatcatgagaatataaatattcgacggtaccagcagaaacgtaac 496
Query: 572 caaccaattgacctaatctgacggctgctttttccatttcagtgaaggtatctggcttag 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaccaattgacctaatctgacggctgctttttccatttcagtgaaggtatctggcttag 556
Query: 632 cgatagttacaggagcttcttcgataatcttttgatgacggctttgaacagaacaatcac 691
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 557 cgatagttacaggagcttcttcgataatcttttgatgacgtctttgaacagaacaatcac 616
Query: 692 gaccaaatagagagatgtttggaccatattgatccagcaaaagttgaacttcc-aatgac 750
||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||
Sbjct: 617 gaccaaatagagagatgttggtaccatattgatcagccaaaagttgaacttccaaatgac 676
Query: 751 gagcctta-cagccaacttcatagaaaaaatgggagaaccaggaatttcatt 801
|||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 677 gagccttaccagccaacttcataataaaaattggagaaccaggaatttcatt 728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6582
Number of Sequences: 1807
Number of extensions: 6582
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 1009
length of database: 10,358,551
effective HSP length: 16
effective length of query: 993
effective length of database: 10,329,639
effective search space: 10257331527
effective search space used: 10257331527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)