BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF12RM1.SCF screened BAC_end
(1008 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1584 0.0
>3x_Contig1741
Length = 21706
Score = 1584 bits (799), Expect = 0.0
Identities = 926/959 (96%), Gaps = 7/959 (0%)
Strand = Plus / Minus
Query: 45 ctttgggttgggtattcgatttcctatttcggtattataataaactctttgattgtccga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19916 ctttgggttgggtattcgatttcctatttcggtattataataaactctttgattgtccga 19857
Query: 105 ttgaccaaatttgggtgtaagggtgtttaactggtgtatgggtgtaagcagtcctaagtt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19856 ttgaccaaatttgggtgtaagggtgtttaactggtgtatgggtgtaagcagtcctaagtt 19797
Query: 165 cttcggatgtctagcatgtttggcatattattcggtcatgtccctttgtcacttcggtta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19796 cttcggatgtctagcatgtttggcatattattcggtcatgtccctttgtcacttcggtta 19737
Query: 225 tttatttcctatgtgaatgcactataaatatatataaatatatcatcatataatcatata 284
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 19736 tttatttcctatgtgaatgcacgggaaatatatataaatatatcatcatataatcatata 19677
Query: 285 tgacgcatcactagtttcatttgtggacggactcttgtcgtattgcttttcttaaatcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19676 tgacgcatcactagtttcatttgtggacggactcttgtcgtattgcttttcttaaatcag 19617
Query: 345 ttgacatctcatgaatttctaaactatctaagactctgtctaaatcatgttccgaaagta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19616 ttgacatctcatgaatttctaaactatctaagactctgtctaaatcatgttccgaaagta 19557
Query: 405 ataacttttctccatcggattcatgcttttccttcttgctttcctttaaaatgtcagaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19556 ataacttttctccatcggattcatgcttttccttcttgctttcctttaaaatgtcagaat 19497
Query: 465 actgttccaggttgataaactcgaacttttgttcctcgctagtgattaatgactccaaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19496 actgttccaggttgataaactcgaacttttgttcctcgctagtgattaatgactccaaat 19437
Query: 525 gtttggctccgaaatatgccttcaaattgcaatataatctgtaagttaaatatattcctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19436 gtttggctccgaaatatgccttcaaattgcaatataatctgtaagttaaatatattcctg 19377
Query: 585 gtacgttgggaaccacaggtattagaatcaatggtaaagaaatcggaatcccaagggcac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19376 gtacgttgggaaccacaggtattagaatcaatggtaaagaaatcggaatcccaagggcac 19317
Query: 645 agagaagtgcgtgtttcttatgatattgttgaccttttttcgaaagttgtttcaactgtg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19316 agagaagtgcgtgtttcttatgatattgttgaccttttttcgaaagttgtttcaactgtg 19257
Query: 705 ctattatggtgctttcat-caccacactcctggggaaatatacatgaatcggctttgggt 763
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 19256 ctataatggtgctttcatccaccacactcctggggaaatatacatgaatcggcttt-ggt 19198
Query: 764 ttcaaagaaa-tacttgatcgtcattttttgcctttacggactcgttttagggtacatta 822
|||||||||| |||| |||||||||||| ||||| ||| |||||||| ||| ||||||
Sbjct: 19197 ttcaaagaaattactgaatcgtcatttttggccttaacgtactcgtttaaggtaacatta 19138
Query: 823 ttccttggtcccattttcaatctgtttcaaaatataagattcagaaggggatggttcgta 882
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 19137 -tccttggtcccattttcaatctgtttcaaaatataagattcagaa-gggatggttcgta 19080
Query: 883 atgaaattcttcgtccatggaatttgattcaacagttccgttaccgtttgaaactattct 942
||| |||||| ||||||||||||||||| |||||||| ||||| || |||||||||| |
Sbjct: 19079 atg-aattctccgtccatggaatttgatccaacagtttcgtta-cggttgaaactatctt 19022
Query: 943 tttatattaccttttttgggaagcttgcactgattaccaaaaattttcagctttttggg 1001
||||| || ||||||||||||||||||||||| ||||||| ||| ||||||| ||||
Sbjct: 19021 tttattataacttttttgggaagcttgcactgaataccaaagattagcagctttctggg 18963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8838
Number of Sequences: 1807
Number of extensions: 8838
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 1008
length of database: 10,358,551
effective HSP length: 16
effective length of query: 992
effective length of database: 10,329,639
effective search space: 10247001888
effective search space used: 10247001888
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)