BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG01RM1.SCF screened BAC_end
(1012 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1745 1487 0.0
3x_Contig1806 547 e-155
3x_Contig1015 406 e-113
>3x_Contig1745
Length = 19830
Score = 1487 bits (750), Expect = 0.0
Identities = 792/800 (99%), Gaps = 6/800 (0%)
Strand = Plus / Plus
Query: 58 ttggcttgttctacccatggaaattctacgggagtaccagactggttgatgatgacagtg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 ttggcttgttctacccatggaaattctacgggagtaccagactggttgatgatgacagtg 91
Query: 118 ttaggattggcctctaagacagcacggacgagatcgtttgttcttcctggcaagatcata 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ttaggattggcctctaagacagcacggacgagatcgtttgttcttcctggcaagatcata 151
Query: 178 tcttccctatcatgaccttcagattcccattctgcgttcaaaccaatacataaaatggct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tcttccctatcatgaccttcagattcccattctgcgttcaaaccaatacataaaatggct 211
Query: 238 ttgtcgtgacccgcagcaagttttgctgccttcctgatttcttcatctgcatcaatagcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttgtcgtgacccgcagcaagttttgctgccttcctgatttcttcatctgcatcaatagcc 271
Query: 298 ttggcaacaccaacttgaaaaccgccagatccaaattcactcaccaactcacttgttgga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttggcaacaccaacttgaaaaccgccagatccaaattcactcaccaactcacttgttgga 331
Query: 358 ccagaaccgtattcgattctaactttatacgctttacccttttgcagactgacagtcttg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccagaaccgtattcgattctaactttatacgctttacccttttgcagactgacagtcttg 391
Query: 418 gtcttttcatcggtaccagcaccgaagcagaaacttccacgagtttggtctttcttctga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtcttttcatcggtaccagcaccgaagcagaaacttccacgagtttggtctttcttctga 451
Query: 478 tcaaccactaattcatcatccaagtacaatatgccggtgccgtaaacctgtaaaccgaat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcaaccactaattcatcatccaagtacaatatgccggtgccgtaaacctgtaaaccgaat 511
Query: 538 aggtagttggcatcttctttaggagtaaagtaaccttccagtgtgatgtagaacagggga 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aggtagttggcatcttctttaggagtaaagtaaccttccagtgtgatgtagaacagggga 571
Query: 598 tttgatgaatcgattntttcatgtttgaagtcgaagagcatgttatgggaatgc-taaag 656
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 572 tttgatgaatcgattttttcatgtttgaagtcgaagagcatgttatgggaatgcttaaag 631
Query: 657 gtagtaacatgaaatggagattttccttgtggcctggctccagcgggttcattgtaaaag 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtagtaacatgaaatggagattttccttgtggcctggctccagcgggttcattgtaaaag 691
Query: 717 taagccgctgcacctacattatcttcttctgctggttttgaaggatctactaccagttgt 776
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 692 taagccgctgcacctacattatctccttctgctggttttgaaggatctactaccagttgt 751
Query: 777 tcaatcaaatttgataaggtcttatgagaattctgccc--agtgtatatggaacttcctt 834
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 752 tcaatcaaatttgataaggtcttatgag-attctgccccaagtgtatatggaacttcctt 810
Query: 835 g-cgactttg-taacaatcc 852
| |||||||| |||||||||
Sbjct: 811 gccgactttgttaacaatcc 830
>3x_Contig1806
Length = 53694
Score = 547 bits (276), Expect = e-155
Identities = 444/500 (88%)
Strand = Plus / Minus
Query: 88 ggagtaccagactggttgatgatgacagtgttaggattggcctctaagacagcacggacg 147
||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 52045 ggagtaccagactggttgacaattacagtgttaggattggcctccaaaacagcacggacg 51986
Query: 148 agatcgtttgttcttcctggcaagatcatatcttccctatcatgaccttcagattcccat 207
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 51985 agatcgtttgttcttcctggcaaagtcatatcttccctatcatgaccttcagattcccat 51926
Query: 208 tctgcgttcaaaccaatacataaaatggctttgtcgtgacccgcagcaagttttgctgcc 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 51925 tctgcgttcaaaccaatacataaaatggctttatcgtgacccgcagcaagttttgctgcc 51866
Query: 268 ttcctgatttcttcatctgcatcaatagccttggcaacaccaacttgaaaaccgccagat 327
||| ||||||| |||||||||||||||||||| ||||||||||| || | | | |||| |
Sbjct: 51865 ttcttgatttcctcatctgcatcaatagcctttgcaacaccaacctggagagcaccagct 51806
Query: 328 ccaaattcactcaccaactcacttgttggaccagaaccgtattcgattctaactttatac 387
|| |||||||| |||| | || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 51805 ccgaattcacttaccagttggctagttgggccagagccatattcgattctgactttatac 51746
Query: 388 gctttacccttttgcagactgacagtcttggtcttttcatcggtaccagcaccgaagcag 447
| |||||||||||| ||| | |||||||| |||||||||| ||||||||||||||| |||
Sbjct: 51745 gatttacccttttgtagagtaacagtcttagtcttttcattggtaccagcaccgaaacag 51686
Query: 448 aaacttccacgagtttggtctttcttctgatcaaccactaattcatcatccaagtacaat 507
|| | ||||| ||||| ||||||||||||||| || |||||| |||||||||||||||
Sbjct: 51685 aatccaccacgggtttgacctttcttctgatcaatcaataattcttcatccaagtacaat 51626
Query: 508 atgccggtgccgtaaacctgtaaaccgaataggtagttggcatcttctttaggagtaaag 567
| || || ||||||||||| ||||| |||| |||||| |||||||| | |||||| |||
Sbjct: 51625 agaccagtaccgtaaacctgcaaaccaaatatgtagttagcatcttcctcaggagtgaag 51566
Query: 568 taaccttccagtgtgatgta 587
|||||||| |||||||||||
Sbjct: 51565 taaccttcaagtgtgatgta 51546
Score = 115 bits (58), Expect = 2e-25
Identities = 101/113 (89%), Gaps = 3/113 (2%)
Strand = Plus / Minus
Query: 726 gcacctacattatcttcttctgctggttttgaaggatctactaccagttgttcaatcaaa 785
|||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 51406 gcacctgcattatctccttctgctggttttgaaggatcaactaccagttgctcaattaaa 51347
Query: 786 tttgataaggtcttatgagaattctgccc--agtgtatatggaacttccttgc 836
|| |||||||||||||||| | ||||||| | ||||||||| ||||||||||
Sbjct: 51346 ttagataaggtcttatgag-actctgccccaattgtatatggtacttccttgc 51295
>3x_Contig1015
Length = 4152
Score = 406 bits (205), Expect = e-113
Identities = 451/533 (84%)
Strand = Plus / Minus
Query: 55 gcattggcttgttctacccatggaaattctacgggagtaccagactggttgatgatgaca 114
||||| |||| || || |||||| || || || ||||||||||||||||||| || |||
Sbjct: 4034 gcattagctttttgtaaccatgggaactcgacaggagtaccagactggttgacaattaca 3975
Query: 115 gtgttaggattggcctctaagacagcacggacgagatcgtttgttcttcctggcaagatc 174
|||||||| || ||||| || |||||||| || ||||||||||||||| ||||||| ||
Sbjct: 3974 gtgttagggttagcctccaatacagcacgaactagatcgtttgttcttgctggcaacgtc 3915
Query: 175 atatcttccctatcatgaccttcagattcccattctgcgttcaaaccaatacataaaatg 234
||||||||||||||||| || |||||||||||||| || |||||||| || |||||||||
Sbjct: 3914 atatcttccctatcatggccctcagattcccattcagcattcaaaccgatgcataaaatg 3855
Query: 235 gctttgtcgtgacccgcagcaagttttgctgccttcctgatttcttcatctgcatcaata 294
||||| || ||| | || ||||| |||||||| ||| ||||||| |||||||||||||||
Sbjct: 3854 gctttatcatgagcggctgcaagctttgctgctttcttgatttcctcatctgcatcaata 3795
Query: 295 gccttggcaacaccaacttgaaaaccgccagatccaaattcactcaccaactcacttgtt 354
|| |||| |||||||| |||| | | |||||||| ||||||||||||||||| ||||||
Sbjct: 3794 gctttggtgacaccaacctgaagagcaccagatccgaattcactcaccaactcgcttgtt 3735
Query: 355 ggaccagaaccgtattcgattctaactttatacgctttacccttttgcagactgacagtc 414
||||||||||| ||||||||||| ||||||||||||||||||||||| | | | ||||||
Sbjct: 3734 ggaccagaaccatattcgattctgactttatacgctttacccttttgtaaagtaacagtc 3675
Query: 415 ttggtcttttcatcggtaccagcaccgaagcagaaacttccacgagtttggtctttcttc 474
|||||||||||| |||||| |||||||| |||||| |||| |||| | ||| ||
Sbjct: 3674 ttggtcttttcaatggtaccggcaccgaaacagaaatcaccactgacttggcccttcctc 3615
Query: 475 tgatcaaccactaattcatcatccaagtacaatatgccggtgccgtaaacctgtaaaccg 534
||||||| || |||||| || || |||||||| | ||||| ||| ||||||| |||||
Sbjct: 3614 tgatcaatcaataattcgtcgtctaagtacaaaacaccggtaccgaaaacctgcaaacca 3555
Query: 535 aataggtagttggcatcttctttaggagtaaagtaaccttccagtgtgatgta 587
|||| ||||| ||||||||||| |||||| ||||||||||| | |||||||||
Sbjct: 3554 aatatgtagtcggcatcttcttcaggagtgaagtaaccttctaatgtgatgta 3502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6756
Number of Sequences: 1807
Number of extensions: 6756
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 3
length of query: 1012
length of database: 10,358,551
effective HSP length: 16
effective length of query: 996
effective length of database: 10,329,639
effective search space: 10288320444
effective search space used: 10288320444
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)