BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG02FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1552 0.0
>3x_Contig1487
Length = 9002
Score = 1552 bits (783), Expect = 0.0
Identities = 841/854 (98%), Gaps = 5/854 (0%)
Strand = Plus / Plus
Query: 88 atacagtatcctcaggggtgttacaaaacagtttacaagcgttgagtactagatatgagg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 atacagtatcctcaggggtgttacaaaacagtttacaagcgttgagtactagatatgagg 1645
Query: 148 cgataattgacgatttggatgattcagataatataaagatcgagaagctatactcgttac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 cgataattgacgatttggatgattcagataatataaagatcgagaagctatactcgttac 1705
Query: 208 cgaaggtgtcaacacctattgacgttaatattcgaattcttaagaaggctacgaaaccct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 cgaaggtgtcaacacctattgacgttaatattcgaattcttaagaaggctacgaaaccct 1765
Query: 268 gcgaagagaaacctgaggaagagtccatattaaaggagtatacttccggggatattatca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 gcgaagagaaacctgaggaagagtccatattaaaggagtatacttccggggatattatca 1825
Query: 328 acgggtttgttgttatagagaatagatctcaacatccccttcgattcgaaatgttttacg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 acgggtttgttgttatagagaatagatctcaacatccccttcgattcgaaatgttttacg 1885
Query: 388 ttacgttggaaggttgtgcatgtgtcattgataaaaaacaaggtaaacgtactgtaaaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 ttacgttggaaggttgtgcatgtgtcattgataaaaaacaaggtaaacgtactgtaaaga 1945
Query: 448 gattccttagaatggtggatttatctgcaagttggtcttattcgaatattgatcttgcca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gattccttagaatggtggatttatctgcaagttggtcttattcgaatattgatcttgcca 2005
Query: 508 cggggttccagtatgttccaggagatatcgatcaggatggatgtgtcttgggattaaaca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 cggggttccagtatgttccaggagatatcgatcaggatggatgtgtcttgggattaaaca 2065
Query: 568 acgacagattcttgcagcctggcgtccgttataaaaaattcttcacatttaagttcccaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 acgacagattcttgcagcctggcgtccgttataaaaaattcttcacatttaagttcccaa 2125
Query: 628 atcaattacttgatatttcatgcaagcatgagatgttctgccattgtcttttgccgccta 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 atcaattacttgatatttcatgcaagcatgagatgttctgccattgtcttttgccgccta 2185
Query: 688 gcttcggggtggacaagtataagcatcacgctcgctattcanatattaagttgaattcta 747
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2186 gcttcggggtggacaagtataagcatcacgctcgctattcaaatattaagttgaattcta 2245
Query: 748 tgcttggatatggtcacttgggcactaaaggatcacccaattttgactaatgatttatgc 807
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2246 tgcttggatatggtcacttgggcactaaaggatca-ccaattttgactaatgatttatgc 2304
Query: 808 agncgat-atctatcggtgagttacaccattgacgcacgagtcgttgggaaagatgcc-a 865
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2305 ag-cgataatctatcggtgagttacaccattgacgcacgagtcgttgggaaagatgccaa 2363
Query: 866 acgttatgaattgccattatggaaggaaaaggaat-taatctaaggtttattccattcgg 924
|||| |||||||| || || ||||||||| |||| |||||||||| |||||||||||||
Sbjct: 2364 acgtaatgaattgacaataatgaaggaaaaagaatataatctaaggcttattccattcgg 2423
Query: 925 attttgccaaccgt 938
||||||||||||||
Sbjct: 2424 attttgccaaccgt 2437
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5627
Number of Sequences: 1807
Number of extensions: 5627
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)