BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG02RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1735 0.0
>3x_Contig1301
Length = 6951
Score = 1735 bits (875), Expect = 0.0
Identities = 931/943 (98%), Gaps = 5/943 (0%)
Strand = Plus / Minus
Query: 44 cttgttacagagctgcggcttcggaatgatgtagttctttatagtatcaaaatcgatctt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 cttgttacagagctgcggcttcggaatgatgtagttctttatagtatcaaaatcgatctt 1877
Query: 104 tccattctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttggatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 tccattctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttggatg 1817
Query: 164 aaaaagcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggtcatatt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 aaaaagcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggtcatagc 1757
Query: 224 tcatggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacatca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 tcatggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacatca 1697
Query: 284 attttgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgtcg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 attttgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgtcg 1637
Query: 344 gtgaagaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatattg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 gtgaagaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatattg 1577
Query: 404 aacgaaatctaattgaatttaattctgttatatagagcggcattttctaccctataatca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 aacgaaatctaattgaatttaattctgttatatagagcggcattttctaccctataatca 1517
Query: 464 agcttttatccccgattgctccattgatattattggtgacagtttaagtcaataggattg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 agcttttatccccgattgctccattgatattattggtgacagtttaagtcaataggattg 1457
Query: 524 tagtcttgacatgtttggatactatgaggtcctcactaaacaacaatggtagcaaaaagc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 tagtcttgacatgtttggatactatgaggtcctcactaaacaacaatggtagcaaaaagc 1397
Query: 584 aacaaagtattaagacaaaagttgttgtgatatatatatatgatttaagaccttttatta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 aacaaagtattaagacaaaagttgttgtgatatatatatatgatttaagaccttttatta 1337
Query: 644 ctgagtatctttaagaaggttttggctgtaggtgttgacactttagctgcatccttaaca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 ctgagtatctttaagaaggttttggctgtaggtgttgacactttagctgcatccttaaca 1277
Query: 704 ctatttttgttgaagtaacagtaacaaatgcattgtcattaaggactggtaatctggagt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 ctatttttgttgaagtaacagtaacaaatgcattgtcattaaggactggtaatctggagt 1217
Query: 764 cctgatgtatcaaatagagggaagcatttttcaatatataattcggaagtcgggcagtgc 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1216 cctgatgtatcaaatagagggaagca-ttttcaatatataattcggaagtcgggcagtgc 1158
Query: 824 atcgtctctgatatttagaattggttg-tacattttagctgcaaatgctaatctttccat 882
|||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||
Sbjct: 1157 atcgtctctgatatttagaa-tggttgttacatttcagctgcaaatgctaatcttttcat 1099
Query: 883 gtatcattggaaaccttttcattgtaagaagtctttcaaataagcaccaacagcttcaca 942
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1098 gtatcatttgaaaccttttcattgtaagaagtctttcaaataagcaccaacagc-tcaca 1040
Query: 943 aatgctggaaaacctttatatcttttgcctcaagcattttaaa 985
||||||| |||||||| |||||||||| |||||||||||||||
Sbjct: 1039 aatgctgcaaaaccttcatatcttttg-ctcaagcattttaaa 998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,492
Number of Sequences: 1807
Number of extensions: 10492
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)