BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG03RM1.SCF screened BAC_end
(1009 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1259 0.0
>3x_Contig1718
Length = 19496
Score = 1259 bits (635), Expect = 0.0
Identities = 830/881 (94%), Gaps = 11/881 (1%)
Strand = Plus / Plus
Query: 44 cttttagaggcgcatattccttattaagtttttgatataaatcatttataattgttttca 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10617 cttttagaggcgcatattccttattaagtttttgatataaatcatttataattgttttca 10676
Query: 104 ccttgtctgggtctcgcctctttgcgtgcctattctttctgatttcggtgttctgcctgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10677 ccttgtctgggtctcgcctctttgcgtgcctattctttctgatttcggtgttctgcctgt 10736
Query: 164 catggttcactatttgttcctttgatgttaccttagtattcatcaccaaggatttaacat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10737 catggttcactatttgttcctttgatgttaccttagtattcatcaccaaggatttaacat 10796
Query: 224 ccaactgcgaaaaaagtctggtgcattgtttcatagttgtgtcgtcccacctacgtgatc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10797 ccaactgcgaaaaaagtctggtgcattgtttcatagttgtgtcgtcccacctacgtgatc 10856
Query: 284 aggcgttattgtatcttgaaagcatgtatggtgtccatatcattgttgttttattgatcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10857 aggcgttattgtatcttgaaagcatgtatggtgtccatatcattgttgttttattgatcc 10916
Query: 344 agatttgatatactaactaactaaactgggtagaaaattttcttaagaaagagtgagatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10917 agatttgatatactaactaactaaactgggtagaaaattttcttaagaaagagtgagatc 10976
Query: 404 aacagaagttaaagggtatctatctacaaaaaaaaatgaaataaaagaaagaaaggtatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10977 aacagaagttaaagggtatctatctacaaaaaaaaatgaaataaaagaaagaaaggtatc 11036
Query: 464 taaagcagcccgaactttgtaacacaatattccacaatgtggctaattttcaagtatgta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11037 taaagcagcccgaactttgtaacacaatattccacaatgtggctaattttcaagtatgta 11096
Query: 524 tatttagatagttttttc-attaaaagtttccagaaagtttactct-attaatatcgaac 581
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 11097 tatttagatagttttttcaattaaaagtttccagaaagtttactctaattattatcgaac 11156
Query: 582 aagccgncgagaacgtcacctttctaattttaggtcttc-agcatgttcgatttccggtt 640
|||||| ||||||||||||| |||||| || |||| || ||||||||||| ||||||||
Sbjct: 11157 aagccgccgagaacgtcacc-ttctaaattagggtcctcaagcatgttcga-ttccggtt 11214
Query: 641 tattttcccttagtaattgctcaccagctctagctaggatagcttctcttctttctttag 700
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11215 tatttttccctagtaattgctcaccagctctagctaggatagcttctcttctctctttag 11274
Query: 701 ttttggcttcatgatctccggtggaaatgagagtcatcttggtcaccgtaagtttttttt 760
|||| |||||||||||| |||| ||| ||||||||||||||||||||||| | | |||
Sbjct: 11275 tttttgcttcatgatctgcggt-gaagtgagagtcatcttggtcaccgtagatatctttc 11333
Query: 761 attcaattcgatgtaaccggcagcccctacttcttgaaattttggaattatttacttgct 820
|| ||| |||||| |||| |||||| |||| ||| | |||| |||||| ||||||||
Sbjct: 11334 atccaa-tcgatgaaacccgcagccactac-tctctgatctttgtaattatctacttgct 11391
Query: 821 ttaaagnttg-ggaaagctcctccaagttggattctctggaaaactcgtataggaattga 879
|| ||| ||| | ||||||| || | |||| || ||||||| ||||||||||||||||||
Sbjct: 11392 tt-aagtttgtgtaaagctcgtcaatgttgtatcctctggataactcgtataggaattga 11450
Query: 880 ttgaaggaatcttactcctccgcaagggtt-agaaaataac 919
|||||| |||| ||||||| || ||||||| ||||||||||
Sbjct: 11451 ttgaagtaatcgtactccttcgaaagggttaagaaaataac 11491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9743
Number of Sequences: 1807
Number of extensions: 9743
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 1009
length of database: 10,358,551
effective HSP length: 16
effective length of query: 993
effective length of database: 10,329,639
effective search space: 10257331527
effective search space used: 10257331527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)