BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG04RM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1431 0.0
>3x_Contig1775
Length = 26320
Score = 1431 bits (722), Expect = 0.0
Identities = 814/834 (97%), Gaps = 8/834 (0%)
Strand = Plus / Minus
Query: 49 cttctagatttgtatggtcgccaataacaatctaatagatccggagaacaaatctcttgt 108
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 cttctagatttgtatg-tcgccaataacaatctaatagatccggagaacaaatctcttgt 3246
Query: 109 caaatatgatgatacgctttatcaaatgtctaacagagctccccaaaatggtggaataca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3245 caaatatgatgatacgctttatcaaatgtctaacagagctccccaaaatggtggaataca 3186
Query: 169 gaaaattgcaagagggctaatagtttcgcccactttcctctcaaaaaacttcaacaccta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3185 gaaaattgcaagagggctaatagtttcgcccactttcctctcaaaaaacttcaacaccta 3126
Query: 229 ccaccaaatctacaagcctaatggtgaaccgcttctcaaagtaccagagaagggacccat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3125 ccaccaaatctacaagcctaatggtgaaccgcttctcaaagtaccagagaagggacccat 3066
Query: 289 cccaactcttgaaattgtcacggagaagaaaattggtaggaaggtcatcacaagagtcac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3065 cccaactcttgaaattgtcacggagaagaaaattggtaggaaggtcatcacaagagtcac 3006
Query: 349 taattttgaaaagtttaaaattgactctgaagaattagctgctgcattaagaaagaagtg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3005 taattttgaaaagtttaaaattgactctgaagaattagctgctgcattaagaaagaagtg 2946
Query: 409 cagcggatccaccaccattggtgagtctaaatcgacgaaaactgctgaagtccaggttca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945 cagcggatccaccaccattggtgagtctaaatcgacgaaaactgctgaagtccaggttca 2886
Query: 469 gggtccacacggttcaatcgtaatctctattttgaatgactacggtattcctactaaatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2885 gggtccacacggttcaatcgtaatctctattttgaatgactacggtattcctactaaatg 2826
Query: 529 gatttcgtttgaaaataaagtcaaaccaaaacaaaagaagaagctgtaaggtacacttat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 gatttcgtttgaaaataaagtcaaaccaaaacaaaagaagaagctgtaaggtacacttat 2766
Query: 589 gcagataggcattatgtgaaactgctctttgtggtctttccagggccctgtatatcatag 648
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2765 gcagataggcattatgtgaaactgctctttgtggtctttccagggccttgtatatcatag 2706
Query: 649 ataactcatcttcttcctcgtcttattcacctacataaacagtataccaattacatatta 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2705 ataactcatcttcttcctcgtcttattcacctacataaacagtataccaattacatatta 2646
Query: 709 cccgggatttgtcgatgtatcaaaattttttcagctttagtataatgatttagtggatta 768
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2645 ccc-ggatttgtcgatgtatcaaaattttttcagctttagtataatgattagttggatta 2587
Query: 769 aaatcttggaagcggttacaaggacgatgtagaac-acgagttgccgttataataccctt 827
|||||||||||||| | ||||| |||||| ||||| |||||||| ||||||| ||||| |
Sbjct: 2586 aaatcttggaagcgttaacaagaacgatg-agaacaacgagttgacgttatattaccc-t 2529
Query: 828 ttgaagaagatac-atcaattttcaactttttacac-taaaaacttcaaagact 879
||| ||| ||||| |||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 2528 ttggagaggatacaatcaattttcaactattt-cacgtaaaaacttcaaagact 2476
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8791
Number of Sequences: 1807
Number of extensions: 8791
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)