BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG05FM1.SCF screened BAC_end
(1016 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig275 1193 0.0
>3x_Contig275
Length = 1611
Score = 1193 bits (602), Expect = 0.0
Identities = 665/676 (98%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 236 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 505
Query: 296 agtagggaaagaatcattgcagaattggggttacgaagtaataaatgaaatatcttggat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtagggaaagaatcattgcagaattggggttacgaagtaataaatgaaatatcttggat 565
Query: 356 caagacaaaccaattaggaagaacaattgtgacaggtagaactggccattggttgaacca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caagacaaaccaattaggaagaacaattgtgacaggtagaactggccattggttgaacca 625
Query: 416 cagtaaagagcatttactcgtcggggtcaaaggcaatccggaatggctaaacagaaaaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagtaaagagcatttactcgtcggggtcaaaggcaatccggaatggctaaacagaaaaat 685
Query: 476 agacattgacttgatcattagcgcaactagagaaaccagtagaaagccggacgaattgta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agacattgacttgatcattagcgcaactagagaaaccagtagaaagccggacgaattgta 745
Query: 536 tggaatcattgaaagacttgtcggtacacatgcccgtaaacttgaaattttcggtaggga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tggaatcattgaaagacttgtcggtacacatgcccgtaaacttgaaattttcggtaggga 805
Query: 596 ccataacatccgtcctggatggttcacgataggaaatcaagtgacaggctcatctatcca 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ccataacatccgtcctggatggttcacgataggaaatcaagtgacaggctcatctatcca 865
Query: 656 tgaagtggatgtgaaaaggaaatacgaaagattcatggaaaaatcaaagaattcaaagac 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tgaagtggatgtgaaaaggaaatacgaaagattcatggaaaaatcaaagaattcaaagac 925
Query: 716 aaactaaagatgtaatactctctttacttcaaatgtcctagcttttatttgtcgatacac 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aaactaaagatgtaatactctctttacttcaaatgtcctagcttttatttgtcgatacac 985
Query: 776 agtatccattangagtctgtatgtgntccttcttacttttcttccttttttt-atttatg 834
||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 986 agtatccattaggagtctgtatgtgttccttcttacttttcttcttttttttaatttatg 1045
Query: 835 tcatacgcccttgt-attac-aacgttacatta-ccac-agttcgtgct-cactt-agca 888
|||||||||||||| ||||| |||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 1046 tcatacgcccttgtaattacaaacgttacattacccacaagttcgtgctacacttaagca 1105
Query: 889 gcaata-gcaatcttt 903
|||||| |||||||||
Sbjct: 1106 gcaataggcaatcttt 1121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7628
Number of Sequences: 1807
Number of extensions: 7628
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1016
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1000
effective length of database: 10,329,639
effective search space: 10329639000
effective search space used: 10329639000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)