BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG05RM1.SCF screened BAC_end
(1032 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1729 0.0
>3x_Contig1451
Length = 8346
Score = 1729 bits (872), Expect = 0.0
Identities = 934/946 (98%), Gaps = 7/946 (0%)
Strand = Plus / Minus
Query: 50 tcctctctaaccagccatatctatcataaacatcgtcggaaatcttttccaaatgctcta 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 tcctctctaaccagccatatctatcataaacatcgtcggaaatcttttccaaatgctcta 2978
Query: 110 aaactctttc-aaggattctttatcgttgcctgccttcttgtacaaaagatcattcttgt 168
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 aaactctttccaaggattctttatcgttgcctgccttcttgtacaaaagatcattcttgt 2918
Query: 169 acatgatacattcgttgttctcatacatttctggttcaccc-aacttgccttcagcaagc 227
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2917 acatgatacattcgttgttctcatacatttctggttcaccccaacttgccttcagcaagc 2858
Query: 228 tcttcaaatgtcgaaagagtattgattgcgtcttgcgtacgcccattcaaatcttgtgct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 tcttcaaatgtcgaaagagtattgattgcgtcttgcgtacgcccattcaaatcttgtgct 2798
Query: 288 atggccaatgaggtccaattggcacgatatcctctgtagttttcccagtacttttttctc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 atggccaatgaggtccaattggcacgatatcctctgtagttttcccagtacttttttctc 2738
Query: 348 gattccagcgcgcctttgaaatcatgaatttgagattgcaatgtcgccaaatctctatag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2737 gattccagcgcgcctttgaaatcatgaatttgagattgcaatgtcgccaaatctctatag 2678
Query: 408 atttgagtgtttgtagaaccattttctaatgcggccttgaaccactttacagcgtctgag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 atttgagtgtttgtagaaccattttctaatgcggccttgaaccactttacagcgtctgag 2618
Query: 468 taatttttcacctgtctgtaataaattcctaataagtgtccaccaattggacttacaaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 taatttttcacctgtctgtaataaattcctaataagtgtccaccaattggacttacaaga 2558
Query: 528 gtgcctttaattttggataacgctttatcaatgtaactagcagcttcttcaggtgtacta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 gtgcctttaattttggataacgctttatcaatgtaactagcagcttcttcaggtgtacta 2498
Query: 588 cagaattgcaagttcaatcccttcaaaattatagagtccacatgactgctgttcttcttc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2497 cagaattgcaagttcaatcccttcaaaattatagagtccacatgactgctgttcttcttc 2438
Query: 648 aagattgtgtccaagatcttcaacgacttcttgtaatttttaccttcatatagttgcagt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2437 aagattgtgtccaagatcttcaacgacttcttgtaatttttaccttcatatagttgcagt 2378
Query: 708 gcttccaacatattgctgtcatccttagacctaccaattggaagtcccactttcccgtga 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2377 gcttccaacatattgctgtcatccttagacctaccaattggaagtcccactttcccgtga 2318
Query: 768 gatagtcccttntttttatacatgctagtgtagatcaatgggtcgctgagtgtagat-ag 826
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2317 gatagtcccttttttttatacatgctagtgtagatcaatgggtcgctgagtgtagataag 2258
Query: 827 caagccagtaagagtgtttctccatttattcagtcatgaatatgattgttgaacttgata 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2257 caagccagtaagagtgtttctccatttattcagtcatgaatatgattgttgaacttgata 2198
Query: 887 aatttcatgatttagaccgtgactattgtaaatttttcagtttanaagat-cattgaaaa 945
| ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct: 2197 attttcatgatttagacgttgactattgtaaatttttcagtttag-agatacattgaaaa 2139
Query: 946 tgaaatgttt-ggtttgaacgaactg-aggtaatagttagcaagcg 989
|||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2138 tgaaatgtttgggtttgaacgaactgaaggtaatagttagcaagcg 2093
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8024
Number of Sequences: 1807
Number of extensions: 8024
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1032
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1016
effective length of database: 10,329,639
effective search space: 10494913224
effective search space used: 10494913224
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)