BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG06FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1086 0.0
>3x_Contig1761
Length = 23186
Score = 1086 bits (548), Expect = 0.0
Identities = 668/696 (95%), Gaps = 9/696 (1%)
Strand = Plus / Plus
Query: 87 ctttagaggaagctagagctaagagaactcaccgtgttattaaccatccatactatggta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14603 ctttagaggaagctagagctaagagaactcaccgtgttattaaccatccatactatggta 14662
Query: 147 atttcaccggtcctcaagcagaagattatctcagaagtagagaacgtggtgatttcgtta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14663 atttcaccggtcctcaagcagaagattatctcagaagtagagaacgtggtgatttcgtta 14722
Query: 207 tcagacaatcttctttttttgatgatcaccttgccattacatggaagttggacaaagatt 266
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14723 tcagacaatcttctcgtggtgatgatcaccttgccattacatggaagttggacaaagatt 14782
Query: 267 tgttccaacacgttgatatcctggaaaaggacaaggaaaatccattggcgttaggtaaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14783 tgttccaacacgttgatatcctggaaaaggacaaggaaaatccattggcgttaggtaaga 14842
Query: 327 ctctaatagtggaggatcaaaaatatcatgatctagatcaaatcatcgttgaatatttgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14843 ctctaatagtggaggatcaaaaatatcatgatctagatcaaatcatcgttgaatatttgc 14902
Query: 387 agaataaagtgaggttgctaaacgaaattacttctaacgaaaagttcaaaaagggaacca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14903 agaataaagtgaggttgctaaacgaaattacttctaacgaaaagttcaaaaagggaacca 14962
Query: 447 agaaagaagtcatcaagttcatcgaagactattcgaaggtgaaccccaacagatccgttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14963 agaaagaagtcatcaagttcatcgaagactattcgaaggtgaaccccaacagatccgttt 15022
Query: 507 attatttcagtttcaattacgaacaccctggatggttctacctaatgtttaaaatcaatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15023 attatttcagtttcaattacgaacaccctggatggttctacctaatgtttaaaatcaatg 15082
Query: 567 cccagtcccaactatacgtatgggaatgttaaactta-acatactggggtttttcttggt 625
||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct: 15083 cccagtcccaactatacgtat-ggaatgttaaacttacacatact-gggtttttcttggt 15140
Query: 626 taattacaactattccactgtgattcaactctgccatgggttcaaaactctttctc-aat 684
||||||||||||| | |||||||||||||||||| |||| |||||||||| ||||| |||
Sbjct: 15141 taattacaactatccaactgtgattcaactctgcaatggtttcaaaactc-ttctcaaat 15199
Query: 685 tcagtagctgaaacaagacccaggaccac-accaccccacctggggaggctactatggat 743
||||||| ||||||||||||| ||| || || || || || |||||||||||||||||
Sbjct: 15200 ccagtagcagaaacaagacccaagacaacaacaacaacaactcgggaggctactatggat 15259
Query: 744 -ttggacagcggt-acaacag-tgcatttttttctg 776
||| ||||||| ||||||| ||||||||||||||
Sbjct: 15260 attgagcagcggtaacaacagttgcatttttttctg 15295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7780
Number of Sequences: 1807
Number of extensions: 7780
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)