BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG06RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig820 1213 0.0
>3x_Contig820
Length = 1802
Score = 1213 bits (612), Expect = 0.0
Identities = 650/660 (98%), Gaps = 2/660 (0%)
Strand = Plus / Plus
Query: 46 tggattaagtctattaggtatgacngcttttaaacaccaattaattatagatactgtgga 105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1145 tggattaagtctattaggtatgac-gcttttaaacaccaattaattatagatactgtgga 1203
Query: 106 atggataggtaaagttcaatcgaaagatggcgatactgacgataaaacaaatgattcgca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 atggataggtaaagttcaatcgaaagatggcgatactgacgataaaacaaatgattcgca 1263
Query: 166 acagttacacggtccatcggaagaagacctgaaggacgaaacttgtaaattactatcgag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 acagttacacggtccatcggaagaagacctgaaggacgaaacttgtaaattactatcgag 1323
Query: 226 gactttgacgagatatttaccgtttatgtccaaatggcttgacagggtaaagattttaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 gactttgacgagatatttaccgtttatgtccaaatggcttgacagggtaaagattttaat 1383
Query: 286 cgatgggattaaaattggtgacattttcatcaactttaccttgataaagatattctccga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 cgatgggattaaaattggtgacattttcatcaactttaccttgataaagatattctccga 1443
Query: 346 gggcaatgagttcgcgtttgaagtgaaccttcaaagtgtcatgttaaaggagaagcagat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gggcaatgagttcgcgtttgaagtgaaccttcaaagtgtcatgttaaaggagaagcagat 1503
Query: 406 ggtcgcaaacacaattttcaagtcagatgccatgatggatttagagagacctttcccact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 ggtcgcaaacacaattttcaagtcagatgccatgatggatttagagagacctttcccact 1563
Query: 466 taacgacattaatatcaatttgaagatgagagagatgaccgtaccggtaagttccttcat 525
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1564 taacgacattaatatcaatttggagatgagagagatgaccgtaccggtaagttccttcat 1623
Query: 526 catagccgtgtatcagttaaggcatgggaaaataccagaccaattggacaaagttaaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 catagccgtgtatcagttaaggcatgggaaaataccagaccaattggacaaagttaaaaa 1683
Query: 586 agatccattgtatgaaggactgccaccaataaaatcaccagaaagcacaatacacgacga 645
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1684 aaatccattgtatgaaagactgccaccaataaaatcaccagaaagcacaatacacgacga 1743
Query: 646 agaatttcctagtgaatggaacattgagcaggtaatgggaaaagttcagaagaagtttga 705
|||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||
Sbjct: 1744 ggaatttcctagtgaatggaa-aatgagcaggtaatggaaaagtttcagaagaagtttga 1802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7190
Number of Sequences: 1807
Number of extensions: 7190
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)