BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG07FM1.SCF screened BAC_end
(1059 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1380 0.0
>3x_Contig1192
Length = 5015
Score = 1380 bits (696), Expect = 0.0
Identities = 750/766 (97%), Gaps = 2/766 (0%)
Strand = Plus / Minus
Query: 89 ctctttgaatggcattcgctaaaagagcctgcccagtgcgtatcatacaaccccaaccaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4654 ctctttgaatggcattcgctaaaagagcctgcccagtgcgtatcatacaaccccaaccaa 4595
Query: 149 tatctgaataaaaactgtcaggatcagttaaagcattttctaatgtgttgataggattat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4594 tatctgaataaaaactgtcaggatcagttaaagcattttctaatgtgttgataggattat 4535
Query: 209 ctctaaaaaaaagggtaaattttataggagatggtccattctcatttctgcggatagggg 268
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 4534 ctctaaaaaaaagggtaaaattgataggagatggtccattctcatttctgcggatagggg 4475
Query: 269 taaactgtgtgcggtatgtgaagaacactcgtgaatgtacgtcagacaaaagtccaggat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4474 taaactgtgtgcggtatgtgaagaacactcgtgaatgtacgtcagacaaaagtccaggat 4415
Query: 329 ttaatgagacgatatttatcaggctttccaaggccgagtcatctgtttccacatccgttc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4414 ttaatgagacgatatttatcaggctttccaaggccgagtcatctgtttccacatccgttc 4355
Query: 389 ttgatttattgttaaggggagcgtattctttgcccaatatgaacacggtgccatctcgat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4354 ttgatttattgttaaggggagcgtattctttgcccaatatgaacacggtgccatctcgat 4295
Query: 449 caacatcttccactatacctaaatgttgtgatatccttgacaagaactccatatttgcat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294 caacatcttccactatacctaaatgttgtgatatccttgacaagaactccatatttgcat 4235
Query: 509 agggatggctgggtttgaagattgagcgatacgttttcctatactttcatgcactttgta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4234 agggatggctgggtttgaagattgagcgatacgttttcctatactttcatgcactttgta 4175
Query: 569 ctcacttgctntttacgatgctgatcataatttgcagaaacttatatttctaatattaat 628
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4174 ctcacttgctttttacgatgctgatcataatttgcagaaacttatatttctaatattaat 4115
Query: 629 gaacaataatctatatgaaaaatgcatttaaaaccatgtagaaaataatacttcatanac 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4114 gaacaataatctatatgaaaaatgcatttaaaaccatgtagaaaataatacttcataaca 4055
Query: 689 agaacgtaactctaaggttagcctggtacaccccttgttgcagctgctaggaatttgaag 748
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4054 agaacgtaactctaaggtaagcctggtacaccccttgttgcagctgctaggaatttgaag 3995
Query: 749 cagtaggtcatcgtgataatggcaaagaggcttaaacattataatgccagaggtggtggg 808
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 3994 cagtaggtcatcgtgataatggcaaagaggcataaacattataatgccagaggtggt-gg 3936
Query: 809 gaaggcaaaaagc-agaaatcccaaccccttggtgaataaaggcaa 853
|||| |||||||| |||||||| | || | |||||||| |||||||
Sbjct: 3935 gaagtcaaaaagcaagaaatccaagccacatggtgaatcaaggcaa 3890
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 1059
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1043
effective length of database: 10,329,639
effective search space: 10773813477
effective search space used: 10773813477
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)