BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG07RM1.SCF screened BAC_end
(1041 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1723 1568 0.0
>3x_Contig1723
Length = 15177
Score = 1568 bits (791), Expect = 0.0
Identities = 888/913 (97%), Gaps = 6/913 (0%)
Strand = Plus / Minus
Query: 47 acttatctaaggatcttctcgtgaattgtactaaaggattgaacattttcctctctttag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5992 acttatctaaggatcttctcgtgaattgtactaaaggattgaacattttcctctctttag 5933
Query: 107 atgaatgtgcgactataaaaaagtttatgggtgtatcataactgtaaacgtcttaaatac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5932 atgaatgtgcgactataaaaaagtttatgggtgtatcataactgtaaacgtcttaaatac 5873
Query: 167 cttgttaagatattaatgtcacttcggcagttgttttaaccacattcagtagatagctat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5872 cttgttaagatattaatgtcacttcggcagttgttttaaccacattcagtagatagctat 5813
Query: 227 aacttctacccattgtttctgttccataacaagatctacaatgagttcgaacaaagtcgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5812 aacttctacccattgtttctgttccataacaagatctacaatgagttcgaacaaagtcgt 5753
Query: 287 gttgatcacaggtgcttcctcgggtattggattggacattgctgaaaagctgcagctgga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752 gttgatcacaggtgcttcctcgggtattggattggacattgctgaaaagctgcagctgga 5693
Query: 347 tggttatgaggtttttggaaccagtagaaagggtgctcagcctaataccaattacagttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5692 tggttatgaggtttttggaaccagtagaaagggtgctcagcctaataccaattacagttt 5633
Query: 407 taagatggtagaattagatgtaacaaaagatggttccgtagcaactgcagtggcggaggt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5632 taagatggtagaattagatgtaacaaaagatggttccgtagcaactgcagtggcggaggt 5573
Query: 467 tatgaagaatgctggcaaaatcgatgtgctaatcaataacgcaggagttgggatatcatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5572 tatgaagaatgctggcaaaatcgatgtgctaatcaataacgcaggagttgggatatcatg 5513
Query: 527 ggctgctgctgaggagagttctatcgaacaatcaaagtttattttcgatacaaatttatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5512 ggctgctgctgaggagagttctatcgaacaatcaaagtttattttcgatacaaatttatt 5453
Query: 587 cggagtgatgaggatgactcaagctgtgttaccacacatgagagaacaaggaagcggcag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 cggagtgatgaggatgactcaagctgtgttaccacacatgagagaacaaggaagcggcag 5393
Query: 647 gattataaatatcggttccatctcaggtattgtccccgttgcattcggtgcaatatattc 706
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5392 gattataaatatcggttccatctcaggtattgtcccggttgcattcggtgcaatatattc 5333
Query: 707 tgcangcaagcacgcactggaagcatacactgaagctttgnaccatgaagtcagaaatca 766
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5332 tgcaagcaagcacgcactggaagcatacactgaagctttggaccatgaagtcagaaatca 5273
Query: 767 aggaattcgtgtttcggtaatagatccccatttaa-taaaacaccaatgttcagttaggg 825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 5272 aggaattcgtgtttcggtaatagatccccatttaattaaaacaccaatgttcagtaagga 5213
Query: 826 atttgaaccccgttgacc-ttatcattatactcaaagacgagaaaaaggttggctacttt 884
|| |||||| | |||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct: 5212 tttggaacccgatagacctttatcaatatactcagagacgagaaaaaggttggctacttc 5153
Query: 885 cattggagaaac-attggagag-gcggaagaactttcgggggttacggatacag-attat 941
|| ||||||||| ||||||||| ||||| ||| ||||| |||||| ||||||| |||||
Sbjct: 5152 ca-tggagaaacaattggagagtgcggaggaaacttcggtggttactgatacagtattat 5094
Query: 942 atttcttgcaaca 954
||| |||||||||
Sbjct: 5093 attccttgcaaca 5081
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7145
Number of Sequences: 1807
Number of extensions: 7145
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 1041
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1025
effective length of database: 10,329,639
effective search space: 10587879975
effective search space used: 10587879975
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)