BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG08FM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 1352 0.0
>3x_Contig1199
Length = 6044
Score = 1352 bits (682), Expect = 0.0
Identities = 758/777 (97%), Gaps = 5/777 (0%)
Strand = Plus / Minus
Query: 218 accgtctgtttcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaat 277
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030 accgtctggatcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaat 5971
Query: 278 gctaccagcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 gctaccagcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttg 5911
Query: 338 tcagttctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagaga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 tcagttctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagaga 5851
Query: 398 ttgagcttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 ttgagcttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagt 5791
Query: 458 ttgaaacattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 ttgaaacattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttca 5731
Query: 518 ataaagcttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 ataaagcttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgt 5671
Query: 578 acctttccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaag 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 acctttccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaag 5611
Query: 638 acgttaagaccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattgg 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 acgttaagaccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattgg 5551
Query: 698 atttgcctatgtgttatggattgtatttgattgagttatacagagagcagctctggacag 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 atttgcctatgtgttatggattgtatttgattgagttatacagagagcagctctggacag 5491
Query: 758 accgttactctcaacttcgacaacaacatgantccttcattgcagcatctttttggatga 817
||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 5490 accgttactctcaacttcgacaacaacatgaat-cttcattgcagcatc-ttttggatga 5433
Query: 818 cgaagttcgacaaagaaactcttggtacaaagattttccatggataactcgatttctaga 877
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 5432 cgaagtacgacaaagaaactcttggtacaaagatttccaatggataactcgatttctaga 5373
Query: 878 tgttgataggttgctaccatcatcagtatacatttcgtccataagtgatcattaccaggg 937
||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || ||
Sbjct: 5372 tgttgatagtttgctaccatcatcagtatacattccgtccataagtgatcataaaca-gg 5314
Query: 938 ggccattgttctcagattaaagattatattaatcaacctggcttcattgaacctagg 994
| ||||| ||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 5313 tgacattg-tctcagattaaagattatattaatcaa-cttgcttcattgaacttagg 5259
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8198
Number of Sequences: 1807
Number of extensions: 8198
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)