BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG08RM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig598 1467 0.0
>3x_Contig598
Length = 2989
Score = 1467 bits (740), Expect = 0.0
Identities = 792/804 (98%), Gaps = 4/804 (0%)
Strand = Plus / Plus
Query: 49 ctttgtttgggaatctttggttgtaaatagccaaaatgtttaaccatgccatgatggccc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1790 ctttgtttgggaatctttggttgtaaatagccaaaatgtttaaccatgccatgatggccc 1849
Query: 109 atacaccatccttctctctaacgtggttagatccggtaccgaatgattcttcaccacaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1850 atacaccatccttctctctaacgtggttagatccggtaccgaatgattcttcaccacaga 1909
Query: 169 ttgaaagtttctttgcatcgaacaaggcacagaaaaacttccaaccggtaggaacctcat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 ttgaaagtttctttgcatcgaacaaggcacagaaaaacttccaaccggtaggaacctcat 1969
Query: 229 aacagttcaaaccttgttccttagcgactctatcaatggcagaagacgttgggaacgaac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 aacagttcaaaccttgttccttagcgactctatcaatggcagaagacgttgggaacgaac 2029
Query: 289 gagctaaaccgtaaattccttg-tttcttgaaataagggatagcagaagcgtactcggca 347
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2030 gagctaaaccgtaaattccttgctttcttgaaataagggatagcagaagcgtactcggca 2089
Query: 348 atgatggcaacagaatcacctggcgagacaaatgctggaccagcaccatagatcatattt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 atgatggcaacagaatcacctggcgagacaaatgctggaccagcaccatagatcatattt 2149
Query: 408 ctatcaccgtcaccatcggaggcagcaccgaattgaattccgtacttgtcgactctctcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2150 ctatcaccgtcaccatcggaggcagcaccgaattgaattccgtacttgtcgactctctcc 2209
Query: 468 actaaagtgtgggcgtaagtcaaattagggtcagggtgcaacccaccgaaatctggtttt 527
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2210 actaaagtgtgggcgtaagtcaaattagggtcagggtgcaa-ccaccgaaatctggtttt 2268
Query: 528 ggatggtagttttgcaaagatgattctggtagacccaattccttaacgaaaagagcttca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 ggatggtagttttgcaaagatgattctggtagacccaattccttaacgaaaagagcttca 2328
Query: 588 ccgtaaggaccggtgacaccgttcattgcatcaaacaagatcttgaacccgttctttgct 647
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 ccgtaa-gaccggtgacaccgttcattgcatcaaacaagatcttgaacccgttctttgct 2387
Query: 648 tgtgtgtcaatgaacgatttgatcaatgggaaatcgaagatttccttcatcaattcaaca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 tgtgtgtcaatgaacgatttgatcaatgggaaatcgaagatttccttcatcaattcaaca 2447
Query: 708 tatgccgcggtagaatcaacgatatctaccaacatatcaccatattttctgatcttgacc 767
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 2448 tatgccgcggtagaatcaacgatatctaccaacaaatcaccata-tttctgatcttgacc 2506
Query: 768 gatcttggttagatcaatggcagggaaagactcgacaatcttataatgcgtcaattccct 827
|||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 2507 gatcttggttagatcaatggcagggaaagactcgacaatcttataatgagtaaattaact 2566
Query: 828 tgatttgtgccagatcgaattggt 851
||||||||| ||||||||||||
Sbjct: 2567 tgatttgtgaacgatcgaattggt 2590
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6641
Number of Sequences: 1807
Number of extensions: 6641
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)