BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG09FM1.SCF screened BAC_end
(1019 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1283 0.0
>3x_Contig1743
Length = 20172
Score = 1283 bits (647), Expect = 0.0
Identities = 699/710 (98%), Gaps = 5/710 (0%)
Strand = Plus / Plus
Query: 91 tgatttgcggtggtgttggtattggcatgatgttccatatatcgagtacattagctagtg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19456 tgatttgcggtggtgttggtattggcatgatgttccatatatcgagtacattagctagtg 19515
Query: 151 tactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaagatta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19516 tactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaagatta 19575
Query: 211 gagcaatctctagagaattactacaggcctctggtaatcttaccaaagtcgcagaggaac 270
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 19576 gagcaatctctagagaattacaacaggcctctggtaatcttaccaaagtcgcagaggaac 19635
Query: 271 aactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgcatcgct 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19636 aactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgcatcgct 19695
Query: 331 ataacaacgctgtaagacaggtatttaatgttggaaagaaggaagctttcacaaatgcga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19696 ataacaacgctgtaagacaggtatttaatgttggaaagaaggaagctttcacaaatgcga 19755
Query: 391 cttttttcagtagtacaaatgtgttgggtgatttctcatttttgctggtattggcctatg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19756 cttttttcagtagtacaaatgtgttgggtgatttctcatttttgctggtattggcctatg 19815
Query: 451 gatcgcatcttgttttacaaggaaaccttacaatcggtgatttaactgcgttcatgctct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19816 gatcgcatcttgttttacaaggaaaccttacaatcggtgatttaactgcgttcatgctct 19875
Query: 511 atactgaatacactggaagtgcagtatttggtctttccaccttttnactc-gaattgatg 569
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 19876 atactgaatacactggaagtgcagtatttggtctttccacctttt-actcggaattgatg 19934
Query: 570 aagggtgctggtgcagctacgagattgtttgaattgcttgattacaaacctactattaaa 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19935 aagggtgctggtgcagctacgagattgtttgaattgcttgattacaaacctactattaaa 19994
Query: 630 tcaactaccgggaaggcgtttaaaccgttaaatggtaaagttgagtttcagcatgtttct 689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19995 tcaactaccgggaaggcgtttaaaccgttaaatggtaaagttgagtttcagcatgtttc- 20053
Query: 690 tttcag-tacccaacaagaaaaacanatcaaatctttaaggatctcaactttacaataga 748
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 20054 tttcagttacccaacaagaaaaacaaatcaaatctttaaggatctcaactttacaatag- 20112
Query: 749 agcccagttctaatgtatgtattgtaagtccatcaggaagaaggaaatct 798
|||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 20113 agccaggttctaatgtatgtattgtaggtccatcaggaagagggaaatct 20162
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1019
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1003
effective length of database: 10,329,639
effective search space: 10360627917
effective search space used: 10360627917
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)