BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG09RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig634 1152 0.0
>3x_Contig634
Length = 1748
Score = 1152 bits (581), Expect = 0.0
Identities = 624/635 (98%), Gaps = 3/635 (0%)
Strand = Plus / Plus
Query: 45 cttgcaacatcaaaagattaatgcttagatgacttccatggagagctgaaattatatgaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cttgcaacatcaaaagattaatgcttagatgacttccatggagagctgaaattatatgaa 785
Query: 105 tattaatatatttgtttgattggtaccttgtatgttgtttatgtgtatatttatatgtta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tattaatatatttgtttgattggtaccttgtatgttgtttatgtgtatatttatatgtta 845
Query: 165 ataatacatagtaccaactctggtgcacttgtaagatacctatgcagtgtaagaaaggaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ataatacatagtaccaactctggtgcacttgtaagatacctatgcagtgtaagaaaggaa 905
Query: 225 ggtgggaaatttcttcaattactcatggcctgagcgttgaagttttttgatcgtgactga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ggtgggaaatttcttcaattactcatggcctgagcgttgaagttttttgatcgtgactga 965
Query: 285 tatcttctaaaacttgatgtataacttcttcttgcagtctcttctcgttctgatcttgtg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tatcttctaaaacttgatgtataacttcttcttgcagtctcttctcgttctgatcttgtg 1025
Query: 345 agttttcttcgtggtcagaattttgatcttcaccagaatcatctttgccattttcttctg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 agttttcttcgtggtcagaattttgatcttcaccagaatcatctttgccattttcttctg 1085
Query: 405 tttgtggctcagattcttgagttatggcaggtggagcgtattgttggtgctgggaatgct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tttgtggctcagattcttgagttatggcaggtggagcgtattgttggtgctgggaatgct 1145
Query: 465 gctgttctgaaggttctgtcaataatttgtgtaaagcactatcatggttggcgtanagat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1146 gctgttctgaaggttctgtcaataatttgtgtaaagcactatcatggttggcgtaaagat 1205
Query: 525 ctttgaacttacccatttccacaactgaaccatcgatgccaagtacaataacatntctcg 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1206 ctttgaacttacccatttccacaactgaaccatcgatgccaagtacaataacat-tctcg 1264
Query: 585 -atcttctgattgtgctcaatctatgagcantgctgataatagttaaatcttttgctctt 643
||||||| ||| | ||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct: 1265 tatcttcttatttttctcaatctatgagcaatgctgataatatttaattcttttgctctt 1324
Query: 644 -attaacctccccaaagtgtagttgatagcgccct 677
||||||||||||||| ||||||||||||||||||
Sbjct: 1325 cattaacctccccaaattgtagttgatagcgccct 1359
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8789
Number of Sequences: 1807
Number of extensions: 8789
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)