BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG10FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 789 0.0
>3x_Contig1428
Length = 9146
Score = 789 bits (398), Expect = 0.0
Identities = 427/433 (98%), Gaps = 3/433 (0%)
Strand = Plus / Minus
Query: 92 ccaagtggatcagttagttaag-tcccaatcatctatcaagctagtggctagcgctctta 150
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7714 ccaagtggatcagttagttaagctcccaatcatctatcaagctagtggctagcgctctta 7655
Query: 151 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 7595
Query: 211 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7594 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 7535
Query: 271 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 7475
Query: 331 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttnaaaaccaatatacc 390
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7474 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 7415
Query: 391 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7414 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgag-tttt 7356
Query: 451 ctttgaaatttgttcatgaactggattctgtacctggaaatgatcccgagcgtagggctg 510
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 7355 ctttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctg 7296
Query: 511 aattttggtcatt 523
||||||||||||
Sbjct: 7295 -attttggtcatt 7284
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6760
Number of Sequences: 1807
Number of extensions: 6760
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)