BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG10RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 934 0.0
>3x_Contig1759
Length = 25622
Score = 934 bits (471), Expect = 0.0
Identities = 557/577 (96%), Gaps = 8/577 (1%)
Strand = Plus / Plus
Query: 36 caagctttgatt-gaagaa-actgtttcctacgagcggaaatgctgttaaatggtttaaa 93
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7951 caagctttgattagaagaacactgtttcctacgagcggaaatgctgttaaatggtttaaa 8010
Query: 94 agatctcaagttttactcaatgaattcaaatattacaatgttgacgtactgtgtttgcaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8011 agatctcaagttttactcaatgaattcaaatattacaatgttgacgtactgtgtttgcaa 8070
Query: 154 gaaattgacacggttcaatacaagtctttctggaaaatggagttcacaaaactaggttac 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8071 gaaattgacacggttcaatacaagtctttctggaaaatggagttcacaaaactaggttac 8130
Query: 214 atgtgtcaattccattttaatcctaccaaaaaccacggagtattaattgcttggaaagaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8131 atgtgtcaattccattttaatcctaccaaaaaccacggagtattaattgcttggaaagaa 8190
Query: 274 gatctatttgatatgacagataagatgttaattgactacgacaaagaaacaacaggtgcc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8191 gatctatttgatatgacagataagatgttaattgactacgacaaagaaacaacaggtgcc 8250
Query: 334 attgaaccaagaacaactaccaaaaatgttggcatgttgctttctttgaagtttaaaaag 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8251 attgaaccaagaacaactaccaaaaatgttggcatgttgctttctttgaagtttaaaaag 8310
Query: 394 aaagtgctagaaaaatatccagacaccaaagtcagtggtataattattggtaccacacat 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 aaagtgctagaaaaatatccagacaccaaagtcagtggtataattattggtaccacacat 8370
Query: 454 ttgttttggcatccatttggcacatatgaaccnacaagacaatgctata-tgtactaaaa 512
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 8371 ttgttttggcatccatttggcacatatgaacggacaagacaatgctatattgtactaaaa 8430
Query: 513 aaagtaaa--aatttccgattcg-atc-acgttctttaaaaccaaaaagacgg-gattat 567
|||||||| |||| | || ||| ||| |||||||| ||||| |||||||||| ||| ||
Sbjct: 8431 aaagtaaaagaattccagaatcgaatcaacgttcttcaaaacgaaaaagacggtgataat 8490
Query: 568 tcacaatggccagcatttttttggggcaatttcaatt 604
||||| |||||||||||||| || ||| |||||||||
Sbjct: 8491 tcacattggccagcatttttctgtggcgatttcaatt 8527
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9401
Number of Sequences: 1807
Number of extensions: 9401
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)