BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZG11FM1.SCF screened BAC_end
         (1023 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig301                                                          733   0.0  

>3x_Contig301 
          Length = 1492

 Score =  733 bits (370), Expect = 0.0
 Identities = 417/426 (97%), Gaps = 5/426 (1%)
 Strand = Plus / Plus

                                                                        
Query: 90   tcgtctgcacagtcagtaatgaatgagctaaatcaaaaaaaaacaacagaccatacaaag 149
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 tcgtctgcaaagtcagtaatgaatgagctaaatcaaaaaaaaacaacagaccatacaaag 1130

                                                                        
Query: 150  gctacggatagcaaaactgtgtccacagcatcggaatcagagtcacgtcctccacagaaa 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 gctacggatagcaaaactgtgtccacagcatcggaatcagagtcacgtcctccacagaaa 1190

                                                                        
Query: 210  agaaacctggaaacaatgctattgaatagaatgaggcaggtgaagaaaaaatcttggaat 269
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 agaaacctggaaacaatgctactgaatagaatgaggcaggtgaagaaaaaatcttggaat 1250

                                                                        
Query: 270  gaagttccaacgaatacagtcgtcgatctggcatatgatactgttcctgaacatacctta 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 gaagttccaacgaatacagtcgtcgatctggcatatgatactgttcctgaacatacctta 1310

                                                                        
Query: 330  tcacaggaaaattaacttaataaacctacatagcattttacatactaattaatctttaca 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 tcacaggaaaattaacttaataaacctacatagcattttacatactaattaatctttaca 1370

                                                                        
Query: 390  ttacaaacatcattactcgtattcacttttaagcaccaccgatattccattgaaactttc 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 1371 ttacaaacatcattactcgtattcacttttaagcaccaccgatattccattgatacttt- 1429

                                                                        
Query: 450  ctgataggaagttaccgacgtttgttgagacatcgctcatgaaattatcattacttcttt 509
            |||||||| ||||||||||||||||||||| | ||||||||||| ||||| |||||||||
Sbjct: 1430 ctgatagg-agttaccgacgtttgttgaga-aacgctcatgaaa-tatca-tacttcttt 1485

                  
Query: 510  gagtgt 515
            ||||||
Sbjct: 1486 gagtgt 1491


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7859
Number of Sequences: 1807
Number of extensions: 7859
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)