BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC2ZG11FM1.SCF screened BAC_end (1023 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig301 733 0.0 >3x_Contig301 Length = 1492 Score = 733 bits (370), Expect = 0.0 Identities = 417/426 (97%), Gaps = 5/426 (1%) Strand = Plus / Plus Query: 90 tcgtctgcacagtcagtaatgaatgagctaaatcaaaaaaaaacaacagaccatacaaag 149 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1071 tcgtctgcaaagtcagtaatgaatgagctaaatcaaaaaaaaacaacagaccatacaaag 1130 Query: 150 gctacggatagcaaaactgtgtccacagcatcggaatcagagtcacgtcctccacagaaa 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1131 gctacggatagcaaaactgtgtccacagcatcggaatcagagtcacgtcctccacagaaa 1190 Query: 210 agaaacctggaaacaatgctattgaatagaatgaggcaggtgaagaaaaaatcttggaat 269 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1191 agaaacctggaaacaatgctactgaatagaatgaggcaggtgaagaaaaaatcttggaat 1250 Query: 270 gaagttccaacgaatacagtcgtcgatctggcatatgatactgttcctgaacatacctta 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 gaagttccaacgaatacagtcgtcgatctggcatatgatactgttcctgaacatacctta 1310 Query: 330 tcacaggaaaattaacttaataaacctacatagcattttacatactaattaatctttaca 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 tcacaggaaaattaacttaataaacctacatagcattttacatactaattaatctttaca 1370 Query: 390 ttacaaacatcattactcgtattcacttttaagcaccaccgatattccattgaaactttc 449 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1371 ttacaaacatcattactcgtattcacttttaagcaccaccgatattccattgatacttt- 1429 Query: 450 ctgataggaagttaccgacgtttgttgagacatcgctcatgaaattatcattacttcttt 509 |||||||| ||||||||||||||||||||| | ||||||||||| ||||| ||||||||| Sbjct: 1430 ctgatagg-agttaccgacgtttgttgaga-aacgctcatgaaa-tatca-tacttcttt 1485 Query: 510 gagtgt 515 |||||| Sbjct: 1486 gagtgt 1491 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7859 Number of Sequences: 1807 Number of extensions: 7859 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 1023 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1007 effective length of database: 10,329,639 effective search space: 10401946473 effective search space used: 10401946473 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)