BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG11RM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1364 0.0
>3x_Contig1795
Length = 38452
Score = 1364 bits (688), Expect = 0.0
Identities = 739/747 (98%), Gaps = 7/747 (0%)
Strand = Plus / Minus
Query: 46 aagagtat-acacttggttgaatgaaccagtgaaaacggaagtgacactctgggatcaga 104
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23589 aagagtatcacacttggttgaatgaaccagtgaaaacggaagtgacactctgggatcaga 23530
Query: 105 atcatcttttatacaacgcaagtatgacggaagattatatttctgaaggcgaagataatg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23529 atcatcttttatacaacgcaagtatgacggaagattatatttctgaaggcgaagataatg 23470
Query: 165 attcgttcaaaaaggtttttgggtttcatggcttttctgcaaatggtacagtaagatcgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23469 attcgttcaaaaaggtttttgggtttcatggcttttctgcaaatggtacagtaagatcgg 23410
Query: 225 aatatgtttactgcaactatgggactatcgaggactatgaacaccttctttcccataacg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23409 aatatgtttactgcaactatgggactatcgaggactatgaacaccttctttcccataacg 23350
Query: 285 tcaaacttgagggtaaaatacacgttattaggtatggggctataatgaaaggaattgtcg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23349 tcaaacttgagggtaaaatacacgttattaggtatggggctataatgaaaggaattgtcg 23290
Query: 345 ttaaaaatgcggaaacatttggcgccctgggtgctattttgtacactgacagttttgatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23289 ttaaaaatgcggaaacatttggcgccctgggtgctattttgtacactgacagttttgatg 23230
Query: 405 atggtttgattactgaaaacaacggctataaaccttatccggaaggacctgcaaggcacg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23229 atggtttgattactgaaaacaacggctataaaccttatccggaaggacctgcaaggcacg 23170
Query: 465 agagttcaatagaaaggggatcagtgttactagttgacagtgtagctggagatccgacta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23169 agagttcaatagaaaggggatcagtgttactagttgacagtgtagctggagatccgacta 23110
Query: 525 ctccggaatattcatcgaaacacaaagatgtcaaaagactcaattcgagtagtaaccttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23109 ctccggaatattcatcgaaacacaaagatgtcaaaagactcaattcgagtagtaaccttc 23050
Query: 585 cgacaatcccgtcagtgcctatgagcgagagagagattgccccactattgaagctnttga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 23049 cgacaatcccgtcagtgcctatgagcgagagagagattgccccactattgaagcttttga 22990
Query: 645 atggaaatgggattcaatgggaaaccaaaggaaatgtaaagggtttccaatacttcagtg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22989 atggaaatgggattcaatgggaaaccaaaggaaatgtaaagggtttccaatacttcagtg 22930
Query: 705 gaccatctgatgcaggtgtttcatgtcgaattgtc-acgaac-aaaatacc-tacaaaag 761
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct: 22929 gaccatctgatgcaggtgtttcatgtcgaattgtcaacgaacaaaaataccttacaaaag 22870
Query: 762 -aataact-acgtag-cattgagattc 785
||||||| |||||| |||||||||||
Sbjct: 22869 aaataactaacgtagtcattgagattc 22843
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6264
Number of Sequences: 1807
Number of extensions: 6264
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)