BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZG12FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 1094 0.0
>3x_Contig343
Length = 1398
Score = 1094 bits (552), Expect = 0.0
Identities = 641/663 (96%), Gaps = 6/663 (0%)
Strand = Plus / Minus
Query: 84 ttatccccgtacgctctgcatcccaaaatatcttgtatcggaataactttctcggcaacc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttatccccgtacgctctgcatcccaaaatatcttgtatcggaataactttctcggcaacc 663
Query: 144 ctctcagactcatccttataataactgatttgcgtcttccttaagacgcaccagtacttg 203
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 662 ctctcagactcatccttataataactgaattgcgtcttccttaagacgcaccagtacttg 603
Query: 204 tgattggatttctncttttgtacactccaattagtccagttctttgccaattgtttcgtg 263
|||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgattgtatttcgtcttcttgacactccaattagtccagttctttgccaattgtttcgtg 543
Query: 264 gatgaaatagacttcgagacggtgggtttttttacaagatatgacgaataaataatctct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gatgaaatagacttcgagacggtgggtttttttacaagatatgacgaataaataatctct 483
Query: 324 tcattatcttcgaaggtttgttgtcccatttcttcttgcagagacaactgtctagtacta 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcattatcttcgaaggtttgttgtcccatttcttcttgcagagacaactgtctagtacta 423
Query: 384 tgatattgatttcgccgttttccttgtaaaaatgatgatttccaggcggcacgatcggcc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgatattgatttcgccgttttccttgtaaaaatgatgatttccaggcggcacgatcggcc 363
Query: 444 agtggtcattgtaatttgttgtcgtttttgtttaatcgtttaggattcgtgccaagttcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtggtcattgtaatttgttgtcgtttttgtttaatcgtttaggattcgtgccaagttcc 303
Query: 504 tttctttatacaaataaatcctttgtttcgaaaatatatgggaaatggatcatgcaggaa 563
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 302 tttctttatacaaat-aatcctttgtttcgaaaatatat-ggaaatggatcatgcagg-a 246
Query: 564 aacacaagaaacccgatatcctgaatacaaaaatgaacgctgatgaaagtatgtagatct 623
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aacacaagaaa-ccgatatcctgaatacaaaaatgaacgctgatgaaagtatgtagatct 187
Query: 624 tcactactacctgctcggttaggatgagtacttgaacatagtgnttggtattctttggaa 683
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 186 tcactactacctgctcggttaggatgagtacttgaacatagtg-ttggtattctctggaa 128
Query: 684 aaaccgattc-aggaaggtaaacgttttattcaaaacataaattctatattatgaattgt 742
|| | ||||| || ||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 127 aatcggattcaagaaaggtaacgtttttattcaaatcataaattctatataatgaattgt 68
Query: 743 gaa 745
|||
Sbjct: 67 gaa 65
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6865
Number of Sequences: 1807
Number of extensions: 6865
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)