BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZG12RM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1762                                                        1039   0.0  

>3x_Contig1762 
          Length = 22098

 Score = 1039 bits (524), Expect = 0.0
 Identities = 619/643 (96%), Gaps = 6/643 (0%)
 Strand = Plus / Minus

                                                                         
Query: 44    ctttacaaaaaaaaaaaaattactatcatttctatattctcatgttcatatataattaac 103
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11522 ctttacaaaaaaaaaaaaattactatcatttctatattctcatgttcatatataattaac 11463

                                                                         
Query: 104   ttaaaaactgcaatataatattatttctcttatggtcacttcgtaagataactaaatatt 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11462 ttaaaaactgcaatataatattatttctcttatggtcacttcgtaagataactaaatatt 11403

                                                                         
Query: 164   gatttgttttctaggtggaagttaacgtgtctataaatcatgacgtttcctccatanctc 223
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 11402 gatttgttttcgaggtggaagttaacgtgtctataaatcatgacgtttcctccatatctc 11343

                                                                         
Query: 224   -atttcaaaatcgaatgaatctagccctgttaggagattcaagttaaattcttgggttgg 282
              | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11342 taattcaaaatcgaatgaatctagccctgttaggagattcaagttaaattcttgggttgg 11283

                                                                         
Query: 283   attttggtaatgtgccaattccaaatcctcaacattcttactacaaaattcttcgtaaaa 342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11282 attttggtaatgtgccaattccaaatcctcaacattcttactacaaaattcttcgtaaaa 11223

                                                                         
Query: 343   tgacttcttttcttcagatgtgtctcccaatagagaattcgcagtacgctgagttaacaa 402
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11222 tgacttcttttcttcagatgtgtctcccaatagagaattcgcagtacgctgagttaacaa 11163

                                                                         
Query: 403   gcttttgtaatacattgcctttaaatcattctttgcagttttctctccaagctttccata 462
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11162 gcttttgtaatacattgcctttaaatcattctttgcagttttctctccaagctttccata 11103

                                                                         
Query: 463   atcttcgatggatcttttctttacgtgaataaagcaacccttctcaaagaactttgtcat 522
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 11102 atcttcgatggatcttttctttacgtgaataaagcaacccttctcaaagaac-ttgtcaa 11044

                                                                         
Query: 523   tgttcaatttattcttctccaaatttcaacgttagtgggatagaacattggaccccgtcc 582
             |||||||||||||| |||||||||| |||||||||| |||||| |||||||| ||||| |
Sbjct: 11043 tgttcaatttattc-tctccaaattccaacgttagt-ggatagtacattggagcccgtac 10986

                                                                         
Query: 583   ttggattctgactattctttcattc-caggaagtagacggggaaacttcatttcgggtta 641
             ||| ||||||||||| |||||| || |||||||||||| |||| ||||||||||| || |
Sbjct: 10985 ttgaattctgactatactttcaatcacaggaagtagacagggagacttcatttcgtgtaa 10926

                                                        
Query: 642   aacttcaatacttttcggatctttaactcgtaatcaacaacgg 684
             ||||||| ||||||||| |||||| |||||| |||||||||||
Sbjct: 10925 aacttcattacttttcgtatcttt-actcgttatcaacaacgg 10884


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,674
Number of Sequences: 1807
Number of extensions: 15674
Number of successful extensions: 222
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)