BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH01FM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1059 0.0
>3x_Contig1799
Length = 39855
Score = 1059 bits (534), Expect = 0.0
Identities = 688/728 (94%), Gaps = 10/728 (1%)
Strand = Plus / Minus
Query: 87 ctaaggcaaaaacattatatcacatgcaaatagccaagcaataatgaaccttaccatcca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27559 ctaaggcaaaaacattatatcacatgcaaatagccaagcaataatgaaccttaccatcca 27500
Query: 147 agactgattatttgctacgctaaccataagaatagtaaaccttaatttataactgaaata 206
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27499 agactgattattt-ctacgctaaccataagaatagtaaaccttaatttataactgaaata 27441
Query: 207 agttttagtatacaccagcttttataagaaaatgtacaaatacatatatatatatagaac 266
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 27440 agttttagtatacaccagcgaagaaaagaaaatgtacaaatacatatatatatatagaac 27381
Query: 267 tgtcacaaacgataattcttctcggagaaaacctacaaacgataggagaaaagggtccag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27380 tgtcacaaacgataattcttctcggagaaaacctacaaacgataggagaaaagggtccag 27321
Query: 327 aggaaacgggttatttattaagaaaataggaagagagaagaattaggcatagagataatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27320 aggaaacgggttatttattaagaaaataggaagagagaagaattaggcatagagataatg 27261
Query: 387 atatagtaaaaggaaagcttgtccttcaaagtcttatatcatttctgagagtccatagaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27260 atatagtaaaaggaaagcttgtccttcaaagtcttatatcatttctgagagtccatagaa 27201
Query: 447 tgtaaaaaaaaattaataaaaggaaaaggaaaagggttaaaaagtcaagtggtatgagag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27200 tgtaaaaaaaaattaataaaaggaaaaggaaaagggttaaaaagtcaagtggtatgagag 27141
Query: 507 tttttcatcagttgcgcttggat-atttaaatttgtacagcctctgatagccaggaaatg 565
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 27140 tttttcatcagttgcgcttggataattaaaatttgtacagcctctgatagccaggaaatg 27081
Query: 566 tgtaagagtcacagatctctgacatgtcgtatcggtagtaattgaa-taaacttaaagtc 624
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 27080 tgtaagagtcacagatctctgacatgtcgtatcggtagtaattgaattaaacttaaagtc 27021
Query: 625 aatttgaattgggatctattnctatttcatttggagttagtttaagttcggctccggcct 684
|||||| |||| ||||| |||||||||||| |||||||| |||| ||||| |||
Sbjct: 27020 aatttgtattgtatcctatttctatttcatttgagtttagtttagtttcgtctccgccct 26961
Query: 685 gcacgcttttttgatctttcaa-tcaaccaga-aattcggagaacgacggccgatctaca 742
|||||||| ||||||||||||| ||||||||| ||| ||||| ||||||||||||||||
Sbjct: 26960 gcacgcttctttgatctttcaattcaaccagagaatcgggagatcgacggccgatctaca 26901
Query: 743 --ttgaacattttc-aagacaa-tcatcaagg-aagaaaaaggggatacagatattttga 797
| |||||||||| | ||||| ||||||||| |||| || | |||||||||||| ||||
Sbjct: 26900 attcgaacattttcgatgacaagtcatcaaggaaagagaaggtggatacagatatcttga 26841
Query: 798 acaattgt 805
||| ||||
Sbjct: 26840 acagttgt 26833
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,294
Number of Sequences: 1807
Number of extensions: 12294
Number of successful extensions: 232
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)