BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH01RM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig666 1364 0.0
>3x_Contig666
Length = 2037
Score = 1364 bits (688), Expect = 0.0
Identities = 834/863 (96%), Gaps = 15/863 (1%)
Strand = Plus / Minus
Query: 48 aatcttctcttctcttgaca-gaaatt-ataatacgtggcataatcttgatacctttgtc 105
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 925 aatcttctcttctcttgacaagaaattcataatacgtggcataatcttgatacctttgtc 866
Query: 106 gaaagataagatggaaatgaagggagaaacgtcaaaaccgtggtcctcaacgtgtagcgc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaaagataagatggaaatgaagggagaaacgtcaaaaccgtggtcctcaacgtgtagcgc 806
Query: 166 ctcccataattttgaactgtccggctgttgaccggatctcaattgagcttctagttcaag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcccataattttgaactgtccggctgttgaccggatctcaattgagcttctagttcaag 746
Query: 226 cacttcttcgtaaacagtttcaatcaatgataaaatgaacttacggccaccagaacggga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacttcttcgtaaacagtttcaatcaatgataaaatgaacttacggccaccagaacggga 686
Query: 286 taaaactgtacgatggtccactgaagaactcaaagcataagatgatcttcttcttttggc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaaactgtacgatggtccactgaagaactcaaagcataagatgatcttcttcttttggc 626
Query: 346 attgatatccacgccttgcaaagattcagacacctcatctagggctgagcttgattgaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attgatatccacgccttgcaaagattcagacacctcatctagggctgagcttgattgaga 566
Query: 406 agacaacgctggagaatcctctttgtgagttgggatttgtaattgctttcttggagcttt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agacaacgctggagaatcctctttgtgagttgggatttgtaattgctttcttggagcttt 506
Query: 466 tgagttcctagtagctgagattttacccaagacaccctctttggcattatccaacccacc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagttcctagtagctgagattttacccaagacaccctctttggcattatccaacccacc 446
Query: 526 cttacttttctgtggtctttctttcgcaacggtaacagccttcttgacctgagattgcat 585
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 cttacttttctgtggtctttctttcgcaacggtaacagccttctcgacctgagattgcat 386
Query: 586 tctctgtaacgcgacgtcagttcttcttgt-acgacctnctaatctgtgacccgagtgct 644
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct: 385 tctctgtaacgcgacgtcagttc-tcttgtaacgacctcctaatctgtgacccgagtgct 327
Query: 645 ctaaatatgcttntagc-atagaatccttattaga-tcagatggagtgacacccctttgg 702
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 326 ctaaatatgctt-tagcaatagaatccttattagattcagatggagtgacaccccttt-g 269
Query: 703 aatga-tttataaacttggaagtagaaat-ctcattgttaggatcatcagtgacaatttg 760
||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 268 aatgattttataaacttggaagtagaaatcctcattgtagggatcatcagtgacaatttg 209
Query: 761 agaatactgatacctggtgataaaatccttgtcttttggagtcattacacccaga-tgtc 819
||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 208 agataactgatacctggtgataaaatccttgtctcttggagtcattaca-ccagagtgtc 150
Query: 820 tgagaattttgtcacccttcgattggctgatttgaaagac-tttcaattcttcat-agtc 877
|||||||||||||| |||||||||| |||||||| ||||| | |||||||||||| ||||
Sbjct: 149 tgagaattttgtcaaccttcgattgtctgatttg-aagacgtctcaattcttcatcagtc 91
Query: 878 aaagaattcttggtgccaaacct 900
|||| || | ||||||||||||
Sbjct: 90 aaaggatcttgggtgccaaacct 68
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7842
Number of Sequences: 1807
Number of extensions: 7842
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)