BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH02FM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1229 1318 0.0
>3x_Contig1229
Length = 4630
Score = 1318 bits (665), Expect = 0.0
Identities = 741/756 (98%), Gaps = 8/756 (1%)
Strand = Plus / Plus
Query: 83 tgatgaagacca-gagagaagaacgtcaaaaggtcaagcaaatgaaagattccaaaccac 141
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2195 tgatgaagaccaagagagaagaacgtcaaaaggtcaagcaaatgaaagattccaaaccac 2254
Query: 142 gtgaaattactgaagaggctcctcaacatagggaacatgaggaacatgggtcttctagta 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2255 gtgaaattactgaagaggctcctcaacatagggaacatgaggaacatgggtcttctagta 2314
Query: 202 cccaagtaaatcaaatcacttctacaccggagcagaagactgaagttgtcgaaaagaaag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2315 cccaagtaaatcaaatcacttctacaccggagcagaagactgaagttgtcgaaaagaaag 2374
Query: 262 catcacaggtcactcatgaagaaccaattaaccccaaagcagatccaacatcttctgaat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2375 catcacaggtcactcatgaagaaccaattaaccccaaagcagatccaacatcttctgaat 2434
Query: 322 atcaagtacctcaaaggaaacaaaagaaagttatacatggtccctacagattattgagac 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2435 atcaagtacctcaaaggaaacaaaagaaagttatacatggtccctacagattattgagac 2494
Query: 382 tactcccacatgcatcaagacccatcatgtctaagattttagaggtgaatcctgctcaaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 tactcccacatgcatcaagacccatcatgtctaagattttagaggtgaatcctgctcaaa 2554
Query: 442 gagctacgatgaaagatatatatgcagatggctggttcgcaaatattccatactgtactc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 gagctacgatgaaagatatatatgcagatggctggttcgcaaatattccatactgtactc 2614
Query: 502 ttgatgacaaaaagaatgtcatacgaggtgctggtcattcgcatactatagtaacagaag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2615 ttgatgacaaaaagaatgtcatacgaggtgctggtcattcgcatactatagtaacagaag 2674
Query: 562 aaaatgctcatttggagaagtataaagtatagtcattgcacaactttcatatccttttta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2675 aaaatgctcatttggagaagtataaagtatagtcattgcacaactttcatatccttttta 2734
Query: 622 tcctctacttttccttanaactatcatctcctgttgtttatgtcattcgttaatactgga 681
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 tcctctacttttccttaaaactatcatctcctgttgtttatgtcattcgttaatactgga 2794
Query: 682 ag-ataacaaaacaggtgtgattggcccc-acatgcatatgtagacttaatttaattact 739
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2795 agtataacaaaacaggtgtgattggccccaacatgcatatgtagacttaatttaattact 2854
Query: 740 ttatttcttgtgtcctcttttcagttcta-ttacattaatattttactgct-acgtat-a 796
|||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||| |
Sbjct: 2855 ttatttcttgtgtccttttttcagttctatttacattatcattttactgctcacgtataa 2914
Query: 797 tactat-acccataggt-catatttactcttttttt 830
|||||| ||| |||||| ||||| |||||||||||
Sbjct: 2915 tactataaccaataggtatatattaactcttttttt 2950
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7652
Number of Sequences: 1807
Number of extensions: 7652
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)