BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH02RM1.SCF screened BAC_end
(1046 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 1612 0.0
>3x_Contig1155
Length = 6106
Score = 1612 bits (813), Expect = 0.0
Identities = 848/859 (98%), Gaps = 1/859 (0%)
Strand = Plus / Minus
Query: 48 cttgttcaattcaccacacaatttactggcacctggaacttcgatagcgtgttgaccgaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 cttgttcaattcaccacacaatttactggcacctggaacttcgatagcgtgttgaccgaa 5512
Query: 108 tttttctgggatttcaccttccaacttggtgacatattcttcgttggcgtaatctggagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 tttttctgggatttcaccttccaacttggtgacatattcttcgttggcgtaatctggagc 5452
Query: 168 gaactgcttgataacatcgtatgttctccatccgtgagagatatcgatgacatgttggga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5451 gaactgcttgataacatcgtatgttctccatccgtgagagatatcgatgacatgttggga 5392
Query: 228 gtcgaagtaaggcttgtccttaccgaaatctctccagaattcagcaatagctggttgaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5391 gtcgaagtaaggcttgtccttaccgaaatctctccagaattcagcaatagctggttgaga 5332
Query: 288 gatgatcaaagtaccatcaacgtcgaacaaagcagcgttgactcttagagagataggttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5331 gatgatcaaagtaccatcaacgtcgaacaaagcagcgttgactcttagagagataggttg 5272
Query: 348 ttgagcagtgttagaggcggtagcagcagacattttttctataataattgtaattcttaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5271 ttgagcagtgttagaggcggtagcagcagacattttttctataataattgtaattcttaa 5212
Query: 408 tgaatttggttgttgatgttcttttagaatatacaatttgtagtagaatagggatatact 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5211 tgaatttggttgttgatgttcttttagaatatacaatttgtagtagaatagggatatact 5152
Query: 468 acaaagtttatgatgactcttgaattcaaattaaccatgattcgatggcctttatatatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5151 acaaagtttatgatgactcttgaattcaaattaaccatgattcgatggcctttatatatt 5092
Query: 528 ttgtttctgaatcaaacgtcccgtttcttattccaatacccagtatatacataaattaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5091 ttgtttctgaatcaaacgtcccgtttcttattccaatacccagtatatacataaattaga 5032
Query: 588 taatagacaatagacaatagacaagaagttcaagtagtcacgatagaaaggacaaaaatg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5031 taatagacaatagacaatagacaagaagttcaagtagtcacgatagaaaggacaaaaatg 4972
Query: 648 cgtaccaccagttacaagatacctcatattagggtctttgataatttggcacatagtgaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4971 cgtaccaccagttacaagatacctcatattagggtctttgataatttggcacatagtgaa 4912
Query: 708 accaactaaaagaaaagagagacanatgaggactgataggaatacatgatatgatatgac 767
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4911 accaactaaaagaaaagagagacaaatgaggactgataggaatacatgatatgatatgac 4852
Query: 768 acagatcagaagcatagatgattaccatacanaaggtacagccaaaaaaaaaggacagtg 827
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 4851 acagatcagaagcatagatgattaccatacaaaagtaacagccaaaaaaaaagaacagtg 4792
Query: 828 catggagtaactgacactcgttaccagagaggcaatgcgaaaagtaccccacaaggaatc 887
||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||
Sbjct: 4791 catggagtaactgacactcgtcaccagagagccaatgcgaaaagtaacccaacaggaatc 4732
Query: 888 ccg-aacaaaagaaaaaga 905
||| |||||||||||||||
Sbjct: 4731 ccgaaacaaaagaaaaaga 4713
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8766
Number of Sequences: 1807
Number of extensions: 8766
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 1046
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1030
effective length of database: 10,329,639
effective search space: 10639528170
effective search space used: 10639528170
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)