BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZH03RM1.SCF screened BAC_end
         (1078 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig431                                                          817   0.0  
3x_Contig1335                                                         196   7e-50

>3x_Contig431 
          Length = 1757

 Score =  817 bits (412), Expect = 0.0
 Identities = 475/491 (96%), Gaps = 4/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 159 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 64

                                                                       
Query: 219 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacaaaaagt 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65  ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacgaaaagt 124

                                                                       
Query: 279 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 184

                                                                       
Query: 339 ataaatatagcgggcgtaataccacccaaggccatacaattaca-cccccaataagattc 397
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 185 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccccaataagattc 244

                                                                       
Query: 398 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 304

                                                                       
Query: 458 agccatcccaacaaatataggcctggaggagtagtgatnttcccattcccagaagtacat 517
           |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||  
Sbjct: 305 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaag-agtacca 363

                                                                       
Query: 518 tttttctcttagatatcttaacgtttggtcaacatggaacttcttatcaatgaacacatt 577
           |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 364 ttttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacata 423

                                                                       
Query: 578 aggaagttcagtagtgttcaatgtattatgcc-aataacagaattttgcagttgcgatgg 636
           ||||||| ||||||||||||||||| |||||| |||||||||||  ||||||||||||||
Sbjct: 424 aggaagtccagtagtgttcaatgta-tatgccaaataacagaatagtgcagttgcgatgg 482

                      
Query: 637 gccaaattatt 647
           |||||||||||
Sbjct: 483 gccaaattatt 493


>3x_Contig1335 
          Length = 8696

 Score =  196 bits (99), Expect = 7e-50
 Identities = 113/115 (98%), Gaps = 2/115 (1%)
 Strand = Plus / Plus

                                                                        
Query: 41   aaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacgttccaca 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8579 aaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacg-tccaca 8637

                                                                   
Query: 101  acaagaatcataattaaaacgttccatacaatattagtctg-tctaaagaggcaa 154
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8638 acaagaatcataattaaaacgttccatacaatattagtctgttctaaagaggcaa 8692


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,076
Number of Sequences: 1807
Number of extensions: 10076
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 2
length of query: 1078
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1062
effective length of database: 10,329,639
effective search space: 10970076618
effective search space used: 10970076618
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)