BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC2ZH03RM1.SCF screened BAC_end (1078 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig431 817 0.0 3x_Contig1335 196 7e-50 >3x_Contig431 Length = 1757 Score = 817 bits (412), Expect = 0.0 Identities = 475/491 (96%), Gaps = 4/491 (0%) Strand = Plus / Plus Query: 159 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 64 Query: 219 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacaaaaagt 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 65 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacgaaaagt 124 Query: 279 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 184 Query: 339 ataaatatagcgggcgtaataccacccaaggccatacaattaca-cccccaataagattc 397 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 185 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccccaataagattc 244 Query: 398 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 304 Query: 458 agccatcccaacaaatataggcctggaggagtagtgatnttcccattcccagaagtacat 517 |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| Sbjct: 305 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaag-agtacca 363 Query: 518 tttttctcttagatatcttaacgtttggtcaacatggaacttcttatcaatgaacacatt 577 |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 364 ttttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacata 423 Query: 578 aggaagttcagtagtgttcaatgtattatgcc-aataacagaattttgcagttgcgatgg 636 ||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||| Sbjct: 424 aggaagtccagtagtgttcaatgta-tatgccaaataacagaatagtgcagttgcgatgg 482 Query: 637 gccaaattatt 647 ||||||||||| Sbjct: 483 gccaaattatt 493 >3x_Contig1335 Length = 8696 Score = 196 bits (99), Expect = 7e-50 Identities = 113/115 (98%), Gaps = 2/115 (1%) Strand = Plus / Plus Query: 41 aaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacgttccaca 100 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8579 aaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacg-tccaca 8637 Query: 101 acaagaatcataattaaaacgttccatacaatattagtctg-tctaaagaggcaa 154 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 8638 acaagaatcataattaaaacgttccatacaatattagtctgttctaaagaggcaa 8692 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,076 Number of Sequences: 1807 Number of extensions: 10076 Number of successful extensions: 95 Number of sequences better than 1.0e-20: 2 length of query: 1078 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1062 effective length of database: 10,329,639 effective search space: 10970076618 effective search space used: 10970076618 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)