BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH04FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 908 0.0
>3x_Contig1770
Length = 29267
Score = 908 bits (458), Expect = 0.0
Identities = 524/536 (97%), Gaps = 9/536 (1%)
Strand = Plus / Minus
Query: 86 taagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattgacct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10009 taagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattgacct 9950
Query: 146 taaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaagcca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9949 taaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaagcca 9890
Query: 206 gtaaatgagatgagtgcatgctacacattgcatataaccttgttaattcgagtgaagtgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9889 gtaaatgagatgagtgcatgctacacattgcatataaccttgttaattcgagtgaagtgg 9830
Query: 266 ccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgttacccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9829 ccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgttacccg 9770
Query: 326 gtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatgtaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 gtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatgtaca 9710
Query: 386 tttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggttcattcaactctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 tttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggttcattcaactctg 9650
Query: 446 tgagccaatatttctgtcaataacagaattctaatctgattccagtcataatacacccat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9649 tgagccaatatttctgtcaataacagaattctaatctgattccagtcataatacacccat 9590
Query: 506 ttttgcgaaatgcctagggttgctggaaagctca-gaagc-agaaacaaggcagggcaa- 562
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||
Sbjct: 9589 ttttgcgaaatgcctagggttgctgg-aagctcaggaagcaagaaacaaggcaaggcaaa 9531
Query: 563 -gagga-ttcagc-angaagatgatgcgtat-acgctcta-ttggtggtgagtttg 613
|||| |||||| | ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 9530 gaaggatttcagcaatgaagatgatgcgtataacgctctatttggtggtgagtttg 9475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,972
Number of Sequences: 1807
Number of extensions: 11972
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)