BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH04RM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 841 0.0
>3x_Contig1734
Length = 17938
Score = 841 bits (424), Expect = 0.0
Identities = 505/527 (95%), Gaps = 4/527 (0%)
Strand = Plus / Minus
Query: 49 ggaattgaaggtgattttttgtgctggactctgaatttactacgtactaaataattctat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13902 ggaattgaaggtgattttttgtgctggactctgaatttactacgtactaaataattctat 13843
Query: 109 ttaatatttggtgtcaagttttgtgtatttcgtttcgtcaaactttttaaattgaaagag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13842 ttaatatttggtgtcaagttttgtgtatttcgtttcgtcaaactttttaaattgaaagag 13783
Query: 169 tactttagactgtcaaagttccttctatgcttaaaaaggttcaaaaaatatacggatgca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13782 tactttagactgtcaaagttccttctatgcttaaaaaggttcaaaaaatatacggatgca 13723
Query: 229 ggtagttattaaccatgatgctaattcctgtaagtatttatacagttttctatattcata 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13722 ggtagttattaaccatgatgctaattcctgtaagtatttatacagttttctatattcata 13663
Query: 289 caaaaaataataatagtaacaaaagtaatagaaggttggtatgcgagtttcctttcaaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13662 caaaaaataataatagtaacaaaagtaatagaaggttggtatgcgagtttcctttcaaat 13603
Query: 349 tttcaatccttggttcttctttttctggtggctggngtcttcccactagcaccgattgta 408
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 13602 tttcaatccttggttcttcttttcttggtggctggggtcttcccactagcaccgattgta 13543
Query: 409 atgttgaccttttggagcacagggaatccgtacgatttagcgacccttggctagatcaaa 468
|||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 13542 atgttgacctttggaggcacagggaatccgtacgatttagcga-ccttggctagatc-aa 13485
Query: 469 gtttatctatctgatataccgtttttaaggaattgggatgcatttggctgtaaaaaaaat 528
|||||||||||||||||||||||||||||||| |||||||||| || |||| | || ||
Sbjct: 13484 gtttatctatctgatataccgtttttaaggaa-tgggatgcatatgcttgtagataagat 13426
Query: 529 cttgaaccatccttatcaa-ttgatgtaagtaaatattcgatttgat 574
|| ||||||||||| ||| ||||||||||||| |||||||||||
Sbjct: 13425 ctgtaaccatccttagcaatttgatgtaagtaatagttcgatttgat 13379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9122
Number of Sequences: 1807
Number of extensions: 9122
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)