BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH05FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1314 0.0
>3x_Contig1781
Length = 20717
Score = 1314 bits (663), Expect = 0.0
Identities = 732/750 (97%), Gaps = 5/750 (0%)
Strand = Plus / Minus
Query: 87 caaggatcgcctcggagaaggcgaggggcaattaagtgcctgggcagagaggcattctct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18656 caaggatcgcctcggagaaggcgaggggcaattaagtgcctgggcagagaggcattctct 18597
Query: 147 ctttttttttttttttttttggtgtttttgtggttgtttcttttggcctcgagacgatac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18596 ctttttttttttttttttttggtgtttttgtggttgtttcttttggcctcgagacgatac 18537
Query: 207 acagaaacatgcgctgggatgggtttatcatgcaatgtggaaagcgaagattgtggctcg 266
|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct: 18536 acagaaacatgcgcaggatcgggaatatcatgcaatgtggaaagcgaagattgtggctcg 18477
Query: 267 aacgagaacatcgtgcatgcagagcgcctttttctagggtagaaggatatagggaagcgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18476 aacgagaacatcgtgcatgcagagcgcctttttctagggtagaaggatatagggaagcgg 18417
Query: 327 actttagccaaggagctgacggagtcttatttgagaaaggtacagtattaacaggtaata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18416 actttagccaaggagctgacggagtcttatttgagaaaggtacagtattaacaggtaata 18357
Query: 387 agaagcaggaaataggtttgtggttcgtgattcatggttcatcgttgacaatcgcatgtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18356 agaagcaggaaataggtttgtggttcgtgattcatggttcatcgttgacaatcgcatgtg 18297
Query: 447 actaaactgattataactcagaggcacatccatagccgccaccgcctggagtctggatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18296 actaaactgattataactcagaggcacatccatagccgccaccgcctggagtctggatca 18237
Query: 507 cgatcttatctccaggacgcatcataacggtgttcttacctcccaagttcacaatggaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18236 cgatcttatctccaggacgcatcataacggtgttcttacctcccaagttcacaatggaac 18177
Query: 567 cttcggtgtcttcacttcctcctcctcttatccacaggttcattcctctttctccatcac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18176 cttcggtgtcttcacttcctcctcctcttatccacaggttcattcctctttctccatcac 18117
Query: 627 caccaccttggagtccattaggcggatgaactcttctctctgaaaggattgaagcttgca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18116 caccaccttggagtccattaggcggatgaactcttctctctgaaaggattgaagcttgca 18057
Query: 687 cttgttctgtaaattccacttcttgaatga-accattccctccaccgaatttgcccccac 745
||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||
Sbjct: 18056 cttgttctgtaaattccacttctcgaatgacaccattccctccacggaatttgcccacac 17997
Query: 746 cgccagacgccttttttattgcaaactgacccaaga-tacaggataatgtctttcgaaga 804
|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 17996 cgccagacgcctttcttattgcaaactgacgcaagattacaggataatgtctttcgaaga 17937
Query: 805 --tccaaatc-gtccttcttgtgttggtca 831
|||| ||| ||| |||||||||||||||
Sbjct: 17936 tctccacatcggtcattcttgtgttggtca 17907
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,771
Number of Sequences: 1807
Number of extensions: 18771
Number of successful extensions: 3760
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)