BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH05RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1501 0.0
>3x_Contig1807
Length = 66587
Score = 1501 bits (757), Expect = 0.0
Identities = 801/811 (98%), Gaps = 4/811 (0%)
Strand = Plus / Plus
Query: 47 tatgaaagttacatcattcatggtaatccaccgtgacaccaaaggaattttttccagtga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36158 tatgaaagttacatcattcatggtaatccaccgtgacaccaaaggaattttttccagtga 36217
Query: 107 tgtaatgcactggacaatggttcctaaaaaatagggcgattaaggcatttcctttccagc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36218 tgtaatgcactggacaatggttcctaaaaaatagggcgattaaggcatttcctttccagc 36277
Query: 167 cttacaatggaatctgaagtaaaaagtttgtactccagatgttcaacgcaataaatggtc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36278 cttacaatggaatctgaagtaaaaagtttgtactccagatgttcaacgcaataaatggtc 36337
Query: 227 ttaaatctttctgcaaaataaaactatgaattatgaacgaactgaaagcccttgttgaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36338 ttaaatctttctgcaaaataaaactatgaattatgaacgaactgaaagcccttgttgaag 36397
Query: 287 tcttgtgatttgaaaacatcaggtgctacttttattgccttcacattttgttcctcctaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36398 tcttgtgatttgaaaacatcaggtgctacttttattgccttcacattttgttcctcctaa 36457
Query: 347 gataaactagcgaaggaatggatatcccaaccagtatcattccaaatcccacaccaattg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36458 gataaactagcgaaggaatggatatcccaaccagtatcattccaaatcccacaccaattg 36517
Query: 407 ggagcccaagcggtgttttgtaaagggctgcaagtactataggggcaactaatttaccga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36518 ggagcccaagcggtgttttgtaaagggctgcaagtactataggggcaactaatttaccga 36577
Query: 467 cacctgcaatagctcctataaacggcattaattgaaccttgacttggggatctatataca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36578 cacctgcaatagctcctataaacggcattaattgaaccttgacttggggatctatataca 36637
Query: 527 tagagaataatgccggtacacttgatcccataaaattatagcctaacattgtgatagaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36638 tagagaataatgccggtacacttgatcccataaaattatagcctaacattgtgatagaca 36697
Query: 587 atccagcggtgaaaaagataccagagtttgtttttggcaatttgtcattggacaatgcct 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36698 atccagcggtgaaaaagataccagagtttgtttttggcaatttgtcattggacaatgcct 36757
Query: 647 cggaagctccaatcatgaaagcttggcctattaaagcgacgaataatgcanatatggtta 706
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 36758 cggaagctccaatcatgaaagcttggcctattaaagcgacgaataatgcaaatatggtta 36817
Query: 707 aagaaaactgattcctgtgtaatgtgttaatgtcacttttttgttcagactcttncttct 766
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 36818 aagaaacttgattcctgtgtaatgtgttaatgtcacttttttgttcagactcttccttct 36877
Query: 767 caatcttatcgttgtcactcgtgtctgttcaatc-tgcgtgctgggagtatttaactttg 825
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 36878 caatcttatcgttgtcactcgtgtctgtttcatcttgcgtgctgggagtatttaactttg 36937
Query: 826 cgaaatag-tttactaa-tccggcgcaaaaa 854
|| ||||| |||||||| |||||||||||||
Sbjct: 36938 cg-aatagttttactaagtccggcgcaaaaa 36967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6315
Number of Sequences: 1807
Number of extensions: 6315
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)