BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH06FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig488 1308 0.0
>3x_Contig488
Length = 1926
Score = 1308 bits (660), Expect = 0.0
Identities = 760/787 (96%), Gaps = 8/787 (1%)
Strand = Plus / Plus
Query: 89 tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 659
Query: 149 aatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatattttac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatattttac 719
Query: 209 cattgatatccagttctattttggaattgccttgatgtgattgttttttccttcttggcg 268
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cattgatatccagtcctacagcggaattgccttgatgtgattgttttttccttcttggcg 779
Query: 269 cacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattctt 839
Query: 329 ctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgatg 899
Query: 389 gattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggcctac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggcctac 959
Query: 449 ctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgtc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 ctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgtc 1019
Query: 509 ctctaatacacctttcacaggcatatttcacaccgttgataagaaccattgtgtgctatt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 ctctaatacacctttcacaggcatatttcacaccgttgataagaaccattgtgtgctatt 1079
Query: 569 tgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaaagct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaaagct 1139
Query: 629 tcaaaagtcagcagtaagaagccagcaaagggacaatgaaaatgacaattagggagtgtg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tcaaaagtcagcagtaagaagccagcaaagggacaatgaaaatgacaattagggagtgtg 1199
Query: 689 aatattaagacaaatgaattanattaggtcactccaaatatgtgtgttttctttttcttt 748
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1200 aatattaagacaaatgaattagattaggtcactcc-aatatgtgtgttttctttttc-tt 1257
Query: 749 tccttaaagtngattaagccgntgtctgactataattcttccc--gaagaggagagaaag 806
|||||||||| |||||||||| |||||||||| || || | || ||||| ||||||||
Sbjct: 1258 tccttaaagttgattaagccgttgtctgactaaaaatcctaccagaaagagaagagaaag 1317
Query: 807 aaaaaa--ggagattttc-gccttatattggggggttgg-tactgagaacgtgaacagaa 862
|||||| | |||| ||| |||||||| | ||||||||| ||||||||||||||||||||
Sbjct: 1318 aaaaaaaggaagatattcagccttataattgggggttggatactgagaacgtgaacagaa 1377
Query: 863 aaagcca 869
||||||
Sbjct: 1378 taagcca 1384
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7466
Number of Sequences: 1807
Number of extensions: 7466
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)