BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZH06RM1.SCF screened BAC_end
         (1015 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1486                                                        1683   0.0  

>3x_Contig1486 
          Length = 12131

 Score = 1683 bits (849), Expect = 0.0
 Identities = 925/946 (97%), Gaps = 5/946 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  tttgaagcagcatcagacataggatggataaagtatctacggagtcatcagagtgttcaa 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21  tttgaagcagcatcagacataggatggataaagtatctacggagtcatcagagtgttcaa 80

                                                                       
Query: 104 tcagattacgttttgatgctgattgacatgaggaattcctggttattacctgtatcgttt 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 81  tcagattacgttttgatgctgattgacatgaggaattcctggttattacctgtatcgtta 140

                                                                       
Query: 164 tctttccactatgatgagtatgtttctgagagggaaagtttggattctaacgagacgaga 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tctttccactatgatgagtatgtttctgagagggaaagtttggattctaacgagacgaga 200

                                                                       
Query: 224 agatttgtggtaccaattcgaaagatcgcaaactatgacgattctccaaattttaaggac 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatttgtggtaccaattcgaaagatcgcaaactatgacgattctccaaattttaaggac 260

                                                                       
Query: 284 aaacttatcccgagaattgatgaaagtaaacaatatctaacctctggactcactttaacc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttatcccgagaattgatgaaagtaaacaatatctaacctctggactcactttaacc 320

                                                                       
Query: 344 caagaaaatgagatgagagaaaagttctggtgcagagaacacatcctaaaccgcttaaag 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaaaatgagatgagagaaaagttctggtgcagagaacacatcctaaaccgcttaaag 380

                                                                       
Query: 404 tgcacatgggatactgccttaaatgaacatactgaagggtctgttgaatttcgccagttt 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacatgggatactgccttaaatgaacatactgaagggtctgttgaatttcgccagttt 440

                                                                       
Query: 464 gtagaaaaactcgataaacaagtgatctcactggtgtacccaccatcaaatgtgtttgat 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaaaaactcgataaacaagtgatctcactggtgtacccaccatcaaatgtgtttgat 500

                                                                       
Query: 524 atcaaagtaagtgcaagtgaaaccacagtaaaagtaggtacacctgtgcgtttgaacgta 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaaagtaagtgcaagtgaaaccacagtaaaagtaggtacacctgtgcgtttgaacgta 560

                                                                       
Query: 584 actgtgaacacgacgttacatacagatcttgttcctatcagatactatatactggactat 643
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtgaacacgacgttacatacagatcttgttcctatcagatactatatactggactat 620

                                                                       
Query: 644 ttcacaggtaaatctgtgcttagcgatcatccaaagtctatcgtattccagggccaaacg 703
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcacaggtaaatctgtgcttagcgatcatccaaagtctatcgtattccagggccaaacg 680

                                                                       
Query: 704 tcaacattagtgagaccgcggatcacgacagaattcaacatcttacctcntaaaaaagct 763
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 681 tcaacattagtgagaccgcggatcacgacagaattcaacatcttacctctaaaaaaagct 740

                                                                       
Query: 764 aagtttcanattgaaattgaagtgccgggaaacatcctgac-aggggaccaatcattat- 821
           |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| 
Sbjct: 741 aagtttcaaattgaaattgaagtgccgggaaacatcctgacaagggaaccaatcattata 800

                                                                       
Query: 822 acagcnagatgatgaagtgcagccac-gcactcattatgtggatcgatgtacatactggn 880
           |||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 801 acagcaggatgatgaagtgcagccacggcactcattatgtggatcgatgtacatactgga 860

                                                                       
Query: 881 acagcatgaccccatc-acttgntnaattatatgttacccgcacagatgattgtcacgtn 939
           ||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||| 
Sbjct: 861 acagcatga-cccatcaacttgttaaattatatgttacccgcacagatgattgtcacgtg 919

                                                         
Query: 940 gataaaaatctctttcaacatgcgaatctgaaaatttttggttctc 985
             ||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 920 attaaaattctctttcacaatgcgaatctgaaaatttttggttctc 965


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6938
Number of Sequences: 1807
Number of extensions: 6938
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 1015
length of database: 10,358,551
effective HSP length: 16
effective length of query: 999
effective length of database: 10,329,639
effective search space: 10319309361
effective search space used: 10319309361
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)