BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH07RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig515 557 e-158
3x_Contig1706 301 1e-81
>3x_Contig515
Length = 1717
Score = 557 bits (281), Expect = e-158
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 45 catgttgcttatcaatctcgtttatcaattttgttgcattgatgaataactctctggacg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 catgttgcttatcaatctcgtttatcaattttgttgcattgatgaataactctctggacg 1496
Query: 105 ttatactacttgaagcggtagtgattcttcgggtttgagtatatttcatgcctgctttgc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 ttatactacttgaagcggtagtgattcttcgggtttgagtatatttcatgcctgctttgc 1556
Query: 165 ccttaatcatgataacaattgttcttggcattattaccttttcatattcttgttctaagt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 ccttaatcatgataacaattgttcttggcattattaccttttcatattcttgttctaagt 1616
Query: 225 catgtacacggtagtttagttcactgcaaaagatttcaagccattcaatgcagtcaataa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 catgtacacggtagtttagttcactgcaaaagatttcaagccattcaatgcagtcaataa 1676
Query: 285 cgctagcacaatcatcatttctcaaatttttcttcgacatc 325
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 cgctagcacaatcatcatttctcaaatttttcttcgacatc 1717
>3x_Contig1706
Length = 16303
Score = 301 bits (152), Expect = 1e-81
Identities = 277/304 (91%), Gaps = 11/304 (3%)
Strand = Plus / Plus
Query: 410 acatcggcttcattaatgttgtactctctagacctttgtatatctctgcatatgattttc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 acatcggcttcattaatgttgtactctctagacctttgtatatctctgcatatgattttc 74
Query: 470 ttgagcatgaaattttctgatgtcatcgcttgaaactggccatgaaatct-ttatgaact 528
||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 75 ttgagcatg-aattttctgatgtcatcgcttgaaactggccatg-aatctctaatgaact 132
Query: 529 ttattgaaagttctttgggaagttccatcaattcaattaatt-ctttccacgtatgccac 587
|||| ||| |||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 133 ttatagaatgttctttgggaagttccatcaaatcaattaattcctttccacgtatgccac 192
Query: 588 ccaagttccaaaa-gaaatgatttcaaacttcccgc-atcaagg-aattatttattcaag 644
|||| ||||||| ||| |||||||||||||||||| ||||||| ||| || ||| | ||
Sbjct: 193 ccaatgtccaaaaggaattgatttcaaacttcccgcaatcaaggaaatcatctatac-ag 251
Query: 645 ttgttc-ttac-atggtttgggcattggtttttttgt-attagaaaccagcttgctaaaa 701
|||||| |||| |||||||| ||||||| ||| |||| ||||||| | |||||||||| |
Sbjct: 252 ttgttctttacaatggtttgcgcattgggtttcttgtaattagaagcaagcttgctaaga 311
Query: 702 ttct 705
||||
Sbjct: 312 ttct 315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8814
Number of Sequences: 1807
Number of extensions: 8814
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 2
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)