BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZH08FM1.SCF screened BAC_end
         (1010 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1644                                                        1287   0.0  

>3x_Contig1644 
          Length = 13148

 Score = 1287 bits (649), Expect = 0.0
 Identities = 788/817 (96%), Gaps = 13/817 (1%)
 Strand = Plus / Plus

                                                                        
Query: 86   aacctaccgagtggacattctattgaagggacaacgaagaaattatatcaatctttagat 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3632 aacctaccgagtggacattctattgaagggacaacgaagaaattatatcaatctttagat 3691

                                                                        
Query: 146  gaggataaactcaggaaatcaatgagatgatcggccctttttagcgactctgaaaaacaa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692 gaggataaactcaggaaatcaatgagatgatcggccctttttagcgactctgaaaaacaa 3751

                                                                        
Query: 206  gaaacacgcctcacattctgttttcagatgagctgtagttcagtaatggcgtgatggata 265
            ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 3752 gaaacacgcctcacattctgtctccagatgagctgtagttcagtaatggcgtgatggata 3811

                                                                        
Query: 266  tcaaggtaccagccaccccgtacgtttcaaaaatcacaattttactaacaattttctatc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3812 tcaaggtaccagccaccccgtacgtttcaaaaatcacaattttactaacaattttctatc 3871

                                                                        
Query: 326  atttcgtgtgatattcttttaaacaggctaagaagtctttcatcatcaagcagaagttgg 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3872 atttcgtgtgatattcttttaaacaggctaagaagtctttcatcatcaagcagaagttgg 3931

                                                                        
Query: 386  ctaaggccaagaaccaaaacagaccattgccacaatggtacagattgaagaccaacaaca 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3932 ctaaggccaagaaccaaaacagaccattgccacaatggtacagattgaagaccaacaaca 3991

                                                                        
Query: 446  agatccgttacaacgctaagagaagacactggagaagaacaaagttgggtttgtaaactt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3992 agatccgttacaacgctaagagaagacactggagaagaacaaagttgggtttgtaaactt 4051

                                                                        
Query: 506  tttgtacatatcggaagaacgcacaacaatttttcttattatgtcaattttctctacagt 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4052 tttgtacatatcggaagaacgcacaacaatttttcttattatgtcaattttctctacagt 4111

                                                                        
Query: 566  ttgcaaagtatactctacttatgtatagatagggtcagtttaataaattcaacatcgttt 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4112 ttgcaaagtatactctacttatgtatagatagggtcagtttaataaattcaacatcgttt 4171

                                                                        
Query: 626  tacggtttttaattaaaactatgtattactcaaagatattatccttatgttaacctcttt 685
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4172 tacggtttttaattaaaactatgtattactcaaagatattatctttatgttaacctcttt 4231

                                                                        
Query: 686  tttaatctaaaaat-catactctgcca-gtattaccgaattgctttgcgtgggaatat-a 742
            |||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||| |
Sbjct: 4232 tttaatctaaaaattcatactctgccaagtattaccgaattgcttcgcgttggaatatca 4291

                                                                        
Query: 743  aca-ggtacggtatgcaaagataaa-ggatgaggctcc-tagataattccagttctggaa 799
            ||| ||||||||||||||||||||| |||||||||| | |||||||||| |||| |||||
Sbjct: 4292 acaaggtacggtatgcaaagataaatggatgaggctacatagataattcaagttttggaa 4351

                                                                        
Query: 800  aa-tattcgaggtattaaaa-tgttcaa-tcccctaaa-tcactata-tttcagaaccta 854
            || |||  |||||||||||| ||||||| | | ||||| ||| |||| |||||||  |||
Sbjct: 4352 aaatatcagaggtattaaaaatgttcaaatacactaaaatcattataatttcagatacta 4411

                                                 
Query: 855  tctagct-aaagagggtt-gataactcatcatattat 889
            ||||||| |||||| ||| ||||||||||||||||||
Sbjct: 4412 tctagcttaaagagtgtttgataactcatcatattat 4448


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7381
Number of Sequences: 1807
Number of extensions: 7381
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)