BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH08RM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1566 0.0
>3x_Contig1384
Length = 9372
Score = 1566 bits (790), Expect = 0.0
Identities = 951/988 (96%), Gaps = 15/988 (1%)
Strand = Plus / Plus
Query: 45 agtgctaatatttgatggtactttacgggacgctgataaaatccaaccttcgcttcatta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 agtgctaatatttgatggtactttacgggacgctgataaaatccaaccttcgcttcatta 2477
Query: 105 cgccaccaaacagaagcaatcgttattgttgattgttaatggagatgttactggagatgc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2478 cgccaccaaacagaagcaatcgttattgttgattgttaatggagatgttactggagatgc 2537
Query: 165 actcgctgctatcaccatcaataacaataagaataaccgcaatggtaatccatctaagac 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2538 actcgctgctatcaccatcaataacaataagaataaccgcaatggtaatccatctaagac 2597
Query: 225 gattatattgaagtatttcgacaaagatcatgataacatttcattacaagaaaactacga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2598 gattatattgaagtatttcgacaaagatcatgataacatttcattacaagaaaactacga 2657
Query: 285 tcttgtcaaattctgtcagctacctcaaggattaggctccatatattcgccgaaattcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2658 tcttgtcaaattctgtcagctacctcaaggattaggctccatatattcgccgaaattcag 2717
Query: 345 tgaatacgttccaagttccgcatctgcgaatctattttttggttccatggaggccatcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 tgaatacgttccaagttccgcatctgcgaatctattttttggttccatggaggccatcaa 2777
Query: 405 ggccaccacaggcgaatgctttctttacaaccctagtgctgctcttgatgacgaaattaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 ggccaccacaggcgaatgctttctttacaaccctagtgctgctcttgatgacgaaattaa 2837
Query: 465 gaacaggtcattacagacaactcttacccttaacgttggtggacagtcggagtttgaaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 gaacaggtcattacagacaactcttacccttaacgttggtggacagtcggagtttgaaat 2897
Query: 525 agatcaaagacgtgcatcgctagacaatatcttgaataacacaatgtgtcatgggttagc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 agatcaaagacgtgcatcgctagacaatatcttgaataacacaatgtgtcatgggttagc 2957
Query: 585 agaaggttttgttcccagtcacggaatagcattggccaaggcagctagttatctttcgca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 agaaggttttgttcccagtcacggaatagcattggccaaggcagctagttatctttcgca 3017
Query: 645 ac-acccttgaaagacgattccttgatggctaagactgtacgtgccgaactttatcg-aa 702
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 3018 acaacccttgaaagacgattccttgatggctaagactgtacgtgccgaac-ttatcgaaa 3076
Query: 703 cactaacattaccaatggatcaagcacttc-aaatagntttggttcgaatagattctcaa 761
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 3077 cactaacattaccaatggatcaagcacttcaaaataagtttggttcgaatagattctcaa 3136
Query: 762 ga-ctaagctggtctctgataccatgaatgtcagatcttttcagaatgcatacttaccag 820
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 gagctaagctggtctctgataccatgaatgtcagatcttttcagaatgcatacttaccag 3196
Query: 821 gatataaaaaagagttg-atgctctcactacgggggacattgnacccttgnataaactan 879
|||||||||||||| || ||||||||||||||||| |||||| ||| | | ||||||||
Sbjct: 3197 gatataaaaaagaggtgaatgctctcactacggggaacattgaaccttggaataaactaa 3256
Query: 880 atcacaccctagaaatggtcccctgtttttgncaaatt-atcaccaatttgcatacatat 938
||||||||||||| | || | ||| ||||| |||||| ||||||| || ||||||||
Sbjct: 3257 atcacaccctagacaatgt-cgctggttttgccaaattaatcaccagttgcaatacatat 3315
Query: 939 gttaccaggatatttgataaacttaaa--gggatgat-aatcgagaa-ctttc-tttaag 993
||||| |||||||||||||||| |||| || ||||| ||||||||| ||||| ||||||
Sbjct: 3316 gttacgaggatatttgataaacctaaaagggaatgataaatcgagaacctttcttttaag 3375
Query: 994 a-ttgctgtctgat-tcattaaggcatc 1019
| |||||||||||| |||||||||||||
Sbjct: 3376 agttgctgtctgatatcattaaggcatc 3403
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6652
Number of Sequences: 1807
Number of extensions: 6652
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)