BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH09FM1.SCF screened BAC_end
(1028 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1067 0.0
>3x_Contig1647
Length = 14353
Score = 1067 bits (538), Expect = 0.0
Identities = 605/624 (96%), Gaps = 3/624 (0%)
Strand = Plus / Plus
Query: 91 tcagttattcaagagttagaaagagaattagacccttcagattcagaatctgtggaggaa 150
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11233 tcagttattgaagagttagaaagagaattagacccttcagattcagaatctgtggaggaa 11292
Query: 151 actgtttctgatgagaatgcagaagaaactcctgaggcaataatgcccaagaacattgat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11293 actgtttctgatgagaatgcagaagaaactcctgaggcaataatgcccaagaacattgat 11352
Query: 211 actgatgaatgtgtatatat-attctttcaaacgatgtcaaagcgggagaagaaatattc 269
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11353 actgatgaatgtgtagatatcattctttcaaacgatgtcaaagcgggagaagaaatattc 11412
Query: 270 aactcgtatggtgaccattccaactcgtacctattagccaggtacggattttgcatcgag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11413 aactcgtatggtgaccattccaactcgtacctattagccaggtacggattttgcatcgag 11472
Query: 330 gataatccacacgatgtagttgatttatcggaagagttggtggagtatggacaaaagaat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11473 gataatccacacgatgtagttgatttatcggaagagttggtggagtatggacaaaagaat 11532
Query: 390 tccaaacggattggagataggatggaatggtgggaggatgaagtacatgcggtgtacaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11533 tccaaacggattggagataggatggaatggtgggaggatgaagtacatgcggtgtacaaa 11592
Query: 450 gagtggtacgaggcaacaagagaggagtcagaagaggaggaagaggaggaagagggagaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11593 gagtggtacgaggcaacaagagaggagtcagaagaggaggaagaggaggaagagggagaa 11652
Query: 510 gagggagaagaggaggagaacgagaacgagtncncagcctccgactctgattcgacgtcc 569
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 11653 gagggagaagaggaggagaacgagaacgagtccccagcctccgactctgattcgacgtcc 11712
Query: 570 tcagaactttcttcggaagataccccagaagataatgacgcctgcggatacgtccaccta 629
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 11713 tcagaactttcttcggaagaaaccccagaagaaaatgacgcctggggatacgtccaccta 11772
Query: 630 aaacactccgtacaaccgaacgatgcgcttcttagctatcttgaacttactgacattgtc 689
|||||||||| | ||||||| |||| || || |||||||||||||| |||||||| ||||
Sbjct: 11773 aaacactccggaaaaccgaatgatgtgc-tcctagctatcttgaacctactgacaatgtc 11831
Query: 690 tacatcaattgtacaagacccttt 713
| |||||| ||||||||| |||||
Sbjct: 11832 tccatcaa-tgtacaagaaccttt 11854
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7363
Number of Sequences: 1807
Number of extensions: 7363
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 1028
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1012
effective length of database: 10,329,639
effective search space: 10453594668
effective search space used: 10453594668
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)