BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH09RM1.SCF screened BAC_end
(1041 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1578 0.0
>3x_Contig1278
Length = 6932
Score = 1578 bits (796), Expect = 0.0
Identities = 925/955 (96%), Gaps = 12/955 (1%)
Strand = Plus / Minus
Query: 48 atcagaagtgcgaatacagagatcaagcatcctaaacgcctatagcgtctccatagacaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4788 atcagaagtgcgaatacagagatcaagcatcctaaacgcctatagcgtctccatagacaa 4729
Query: 108 tcatgtccgagcgtaaatcaacaaacaaatactacccaccagactatgatccggtgaagg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4728 tcatgtccgagcgtaaatcaacaaacaaatactacccaccagactatgatccggtgaagg 4669
Query: 168 ctgagcgagaggccagaaagctctccaaacggcttaaaacgatgaacaaggataccatca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4668 ctgagcgagaggccagaaagctctccaaacggcttaaaacgatgaacaaggataccatca 4609
Query: 228 ctattagattgatgactccatttagcatgcggtgtctgaaatgtaatgacttcataccga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4608 ctattagattgatgactccatttagcatgcggtgtctgaaatgtaatgacttcataccga 4549
Query: 288 agagcaggaaatttaatgcaaagaaggaaaccttacctgagaagtacttagacaagatcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4548 agagcaggaaatttaatgcaaagaaggaaaccttacctgagaagtacttagacaagatcc 4489
Query: 348 gtttatatcgttttgagatacgatgtccaagttgtaacaatgttatttctttcaagacta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4488 gtttatatcgttttgagatacgatgtccaagttgtaacaatgttatttctttcaagacta 4429
Query: 408 atccacagactggagattatacaatggatgtaggcggagttaagaattttatcagtaccg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4428 atccacagactggagattatacaatggatgtaggcggagttaagaattttatcagtaccg 4369
Query: 468 ctgataaaaatgggtcggaacccaataaggagatcccggagaatgagactttagaacaga 527
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 4368 ctgataaaaatgggtcggaacccaataaggagatcccggaaaatgagactttagaacaaa 4309
Query: 528 tgttggaaagattagagagagagcaagagttggaaaacgagaaaggacaagatgatggca 587
| |||| || |||||| | |||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 4308 tattggcaaaattagaaaaagagcaagagttggtaaacgagaaaggaaaagatgatggca 4249
Query: 588 gagatagaatggagattatagaggaaaaactagccaaattacaacgagaacaggaggacg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4248 gagatagaatggagattatagaggaaaaactagccaaattacaacgagaacaggaggacg 4189
Query: 648 atgttgaattggaaaaaatcgccgaaagagaacaaataagaatagagaaactagaagaat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4188 atgttgaattggaaaaaatcgccgaaagagaacaaataagaatagagaaactagaagaat 4129
Query: 708 acaatcactcaagaaagcgcanacaagaagatcaggacactttagatgatatgattgcag 767
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4128 acaatcactcaagaaagcgcaaacaagaagatcaggacactttagatgatatgattgcag 4069
Query: 768 aaacaagc-tttcatgatcatgntgttaaaccagacgatgagaacggtcangacgccggt 826
||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 4068 -aacaagcttttcatgatcatgttgttaaaccagacgatgagaacggtcaggacgccggt 4010
Query: 827 caaagatgc-agtaacagaattactgtggtaccgacgaaattagcattaaagaaaaaaaa 885
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4009 c-aagatgcaagtaacagaattactgtggtaccgacgaaattagcattaaagaaaaaaaa 3951
Query: 886 g-atccacttggagtgaaagctg-agaggaagaaggtttgacgca-tatgctattttggt 942
| |||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||| |
Sbjct: 3950 gaatccacttggagtg-aagctgaagaggaagaaggtatgacgcagtatgctattttgtt 3892
Query: 943 tttggtaacccctttccttaa--gtngtagccgcatgttacgaagt-cgatgatc 994
|||| ||| |||||||||||| | |||||||||||| ||||||| ||||||||
Sbjct: 3891 tttgttaa-ccctttccttaaagtttgtagccgcatgtaacgaagtacgatgatc 3838
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7889
Number of Sequences: 1807
Number of extensions: 7889
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 1041
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1025
effective length of database: 10,329,639
effective search space: 10587879975
effective search space used: 10587879975
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)