BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH10FM1.SCF screened BAC_end
(1002 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1092 0.0
>3x_Contig1330
Length = 7703
Score = 1092 bits (551), Expect = 0.0
Identities = 660/687 (96%), Gaps = 7/687 (1%)
Strand = Plus / Plus
Query: 88 ccaatcagaacacattacttttaaatgagttagagcaatattttgcaggaaatagtttat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 ccaatcagaacacattacttttaaatgagttagagcaatattttgcaggaaatagtttat 5630
Query: 148 tacctgcggacgatttacccacaagtaaggcacctgtcaaaattaaaaaatcgttactgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 tacctgcggacgatttacccacaagtaaggcacctgtcaaaattaaaaaatcgttactgc 5690
Query: 208 tccacatatggcttaattacatatctggttccatgtctattaatgagttagaccaaagat 267
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5691 tccacatatggcttaattacatagctggttccatgtctattaatgagttagaccaaagat 5750
Query: 268 gtgttctttctagtacctgtttcaagttagcaaagcaacaatatctaccgtacctaagat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751 gtgttctttctagtacctgtttcaagttagcaaagcaacaatatctaccgtacctaagat 5810
Query: 328 atcttgtcggtatttggaatttaatgaataataccattgcgatgaacagcaaagaagttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 atcttgtcggtatttggaatttaatgaataataccattgcgatgaacagcaaagaagttg 5870
Query: 388 ctttgacaaaagcaaggttagatcaaatcgtcaaagatctaaaagccaactctgacactg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 ctttgacaaaagcaaggttagatcaaatcgtcaaagatctaaaagccaactctgacactg 5930
Query: 448 aaactacagccaatagtacatcatagatttatcatatgttatctattaaatctt-aagaa 506
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 5931 aaactacagccaatagtacatcatagatttatcatatgttatcta-taaatcttaaagaa 5989
Query: 507 taactttcaattgcataaaataaaaacgactaaatactctctaatctactggaatattaa 566
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5990 taacttcaatttgcataaaataaaaacgactaaatactctctaatctactggaatattaa 6049
Query: 567 ttattcttggatgactttttcagaccatttgttgaagatgtcgatcttttcatggcatat 626
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6050 ttattcttggatgactttttcagaccattgtttgaagatgtcgatcttttcatggcatat 6109
Query: 627 gcagcacttgcttgcttagaactcaaactactttcactatccctttagatgccttttata 686
|||||||||||||||| ||| ||||||||||||||||||| |||| ||||| | | |||
Sbjct: 6110 gcagcacttgcttgctcagatctcaaactactttcactat-ccttcagatgtcctctatc 6168
Query: 687 atctagatcaacagtaccggcacttttggataaggaagaattttccaac-agtaacccta 745
|||||||||||||||||||||||||| | |||| | ||| | |||||| ||||||||||
Sbjct: 6169 atctagatcaacagtaccggcactttggaataaag-agacatctccaacaagtaacccta 6227
Query: 746 -agtatctaacacttgtttgtggatca 771
|||||||| |||||| ||||||||||
Sbjct: 6228 gagtatctagcacttg-ttgtggatca 6253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8137
Number of Sequences: 1807
Number of extensions: 8137
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 1002
length of database: 10,358,551
effective HSP length: 16
effective length of query: 986
effective length of database: 10,329,639
effective search space: 10185024054
effective search space used: 10185024054
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)