BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH10RM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1507 0.0
3x_Contig1746 145 2e-34
3x_Contig1671 145 2e-34
3x_Contig1276 145 2e-34
3x_Contig384 145 2e-34
>3x_Contig1625
Length = 13618
Score = 1507 bits (760), Expect = 0.0
Identities = 888/918 (96%), Gaps = 11/918 (1%)
Strand = Plus / Plus
Query: 45 ctttgaaggaaagaagagcaaagaaggaagaacaagaaaggtacgatagattggctgcca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8053 ctttgaaggaaagaagagcaaagaaggaagaacaagaaaggtacgatagattggctgcca 8112
Query: 105 agatgcacgctaagaaggtcgatagactaagaagaagagaaaagagaaataaggctttga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8113 agatgcacgctaagaaggtcgatagactaagaagaagagaaaagagaaataaggctttga 8172
Query: 165 aagagcgttgagacataaagtcataaatactgtataatagaataaagacatatctgcatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8173 aagagcgttgagacataaagtcataaatactgtataatagaataaagacatatctgcatt 8232
Query: 225 aacgatttaggcttgttccgtcctccgcaattgtatatactgacgatgaaaaagtatgtg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8233 aacgatttaggcttgttccgtcctccgcaattgtatatactgacgatgaaaaagtatgtg 8292
Query: 285 ggaaattgacaaaaattaaaaccaatttgctgcttctgtggatcgaacacaggaccttat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8293 ggaaattgacaaaaattaaaaccaatttgctgcttctgtggatcgaacacaggaccttat 8352
Query: 345 gaacttcagtcatacgctctcccaactgagctaaagcagccaaattaattacaagaacca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8353 gaacttcagtcatacgctctcccaactgagctaaagcagccaaattaattacaagaacca 8412
Query: 405 gttttctttcgctcaccttgcactaaaattactgttatggatatttctcaatgattttct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8413 gttttctttcgctcaccttgcactaaaattactgttatggatatttctcaatgattttct 8472
Query: 465 aatgatggatgtgagtgtcaacttaacgatagaacaggattaagtttatagtgtatgaga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8473 aatgatggatgtgagtgtcaacttaacgatagaacaggattaagtttatagtgtatgaga 8532
Query: 525 tacgtctcggtacgctctgatatttcgaacggtgaatttattagtgctctgttaaaaggg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8533 tacgtctcggtacgctctgatatttcgaacggtgaatttattagtgctctgttaaaaggg 8592
Query: 585 atcttttgctcagtgccgttgaaataattgaaacaatgtcaaaggatttgggagagatta 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8593 atcttttgctcagtgccgttgaaataattgaaacaatgtcaaaggatttgggagagatta 8652
Query: 645 tccatnntcgat-aaggccatttactggagcttat-gatgangatgttcagtcaatcaac 702
||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 8653 tccattc-ggataaaggccatttactggagcttatagatgaggatgttcagtcaatcaac 8711
Query: 703 gtaattaaaaccaagcttcgagagcaatccaaggaccccgtaccgtctaaaagaaggaan 762
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8712 gtaattaaaaccaagcttcgagagcaatccaaggaccccgtaccgtctaaaaagaggaaa 8771
Query: 763 atgaacgattcgactagtgtcctagatggaataatgtangaagatttcagggcatat-ac 821
|||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||
Sbjct: 8772 atgaacgattcgactagtgtcctagatggaataaatgaggaagatttcaggcaatataac 8831
Query: 822 caggctaaagat-gagtgcgagnattctac-aaggacagcatgagaaac-gacgatggcg 878
|||||||||||| ||||||||| ||||||| ||| |||||||||||||| ||||||||||
Sbjct: 8832 caggctaaagatagagtgcgagaattctacaaagaacagcatgagaaacagacgatggcg 8891
Query: 879 tac-atttacaggc-agaaattatttcaggactaaa-tgcgag-cagaatgactgtttgg 934
||| |||||||||| |||| | |||||| ||||||| |||||| ||||||||||||||||
Sbjct: 8892 tacaatttacaggcaagaattaatttcaagactaaagtgcgagccagaatgactgtttgg 8951
Query: 935 gatgctttatgcccatta 952
||||||||||||| ||||
Sbjct: 8952 gatgctttatgccaatta 8969
>3x_Contig1746
Length = 26672
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 312 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12219 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 12160
Query: 372 gagctaaagcagc 384
|||||||||||||
Sbjct: 12159 gagctaaagcagc 12147
>3x_Contig1671
Length = 12265
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 312 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 5225
Query: 372 gagctaaagcagc 384
|||||||||||||
Sbjct: 5224 gagctaaagcagc 5212
>3x_Contig1276
Length = 6662
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 312 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 692
Query: 372 gagctaaagcagc 384
|||||||||||||
Sbjct: 693 gagctaaagcagc 705
>3x_Contig384
Length = 1678
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 312 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 1505
Query: 372 gagctaaagcagc 384
|||||||||||||
Sbjct: 1506 gagctaaagcagc 1518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7472
Number of Sequences: 1807
Number of extensions: 7472
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 5
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)