BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH11FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1550 0.0
>3x_Contig1617
Length = 15119
Score = 1550 bits (782), Expect = 0.0
Identities = 869/889 (97%), Gaps = 8/889 (0%)
Strand = Plus / Plus
Query: 88 attatactcctattgattgtaaccagacatttgatgacggtatctcttacaagaaacaca 147
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 attatacttgtattgattgtaaccagacatttgatgacggtatctcttacaagaaacaca 3084
Query: 148 tccagtgcataacagaggatgaaaaatatcagaaaggattatacaagggtaaaaagaacg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 tccagtgcataacagaggatgaaaaatatcagaaaggattatacaagggtaaaaagaacg 3144
Query: 208 g-aat-agaatgaccattatt-ataacaaccgaacgctcaagtgaagaaggaagtcaagg 264
| ||| |||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct: 3145 gtaatcagaatgaccaaaatggaaaacaaccgaacgctcaagtgaagaaggaagtcaagg 3204
Query: 265 tcgaaaagaaagaggaaaagcctgtcaagaaggaatctaaaccagagaagaaggataaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 tcgaaaagaaagaggaaaagcctgtcaagaaggaatctaaaccagagaagaaggataaga 3264
Query: 325 aggataagaaagacaagaagtcaagcctaatcaagggtgaatcattgtataaaatcttaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 aggataagaaagacaagaagtcaagcctaatcaagggtgaatcattgtataaaatcttaa 3324
Query: 385 aatctatcaacaataaagacgacaaaaaagaattattgaagaggttgatcgtaacagcgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 aatctatcaacaataaagacgacaaaaaagaattattgaagaggttgatcgtaacagcgg 3384
Query: 445 aaaacaaaattgagctgcagtaactaaacgaacattcttcgcacattatttgtttacatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 aaaacaaaattgagctgcagtaactaaacgaacattcttcgcacattatttgtttacatt 3444
Query: 505 attttacagatgatttcgtgaagaaatctatactagcgattttaaaagtacataattcat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 attttacagatgatttcgtgaagaaatctatactagcgattttaaaagtacataattcat 3504
Query: 565 taaagagcgtgaaactatcataatcatcacacgctcttagacaaacctttagataattta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3505 taaagagcgtgaaactatcataatcatcacacgctcttagacaaacctttagataattta 3564
Query: 625 ttataaaactgattcaacgattttagcggaaaactgagggtctcgaacatatactcgggg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3565 ttataaaactgattcaacgattttagcggaaaactgagggtctcgaacatatactcgggg 3624
Query: 685 agctgatcttgtaactgtttcaattcttgtactgacctttgtttcaacaacggtacgtaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3625 agctgatcttgtaactgtttcaattcttgtactgacctttgtttcaacaacggtacgtaa 3684
Query: 745 acaatctccgtctcatcgtccttccccttcacgaatcctaactttgtatccattatccca 804
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3685 acaatctccgtctcatcgtccttccccttcacgaatcctaacttgtaatccattatccca 3744
Query: 805 ttcttgttcccttgactggtatcaaaccacagccctagatcatcctcatatgtcttatgt 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3745 ttcttgttcccttgactggtatcaaaccacagccctagatcatcctcatatgtcttatgt 3804
Query: 865 atccttactccacacaattgctcgaat-aatctttcattatctcagattgtt-ctctgcg 922
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 3805 atccttactccacacaattgctcgaataaatctttcattatctcagattgttcctctgcg 3864
Query: 923 tccgttttcgaatcctc--aatgagaaatcttggtc-tatcggattgca 968
|||| |||||||||||| | ||||||||||| ||| ||||||||||||
Sbjct: 3865 tccgctttcgaatcctccaattgagaaatctttgtcttatcggattgca 3913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8156
Number of Sequences: 1807
Number of extensions: 8156
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)