BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC2ZH11RM1.SCF screened BAC_end (1003 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1063 1639 0.0 >3x_Contig1063 Length = 5012 Score = 1639 bits (827), Expect = 0.0 Identities = 858/866 (99%), Gaps = 2/866 (0%) Strand = Plus / Minus Query: 46 ttttgatttataattgaaattgtttacaattcgtgataacgggtcatctcaagaacagtc 105 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3469 ttttgatttataattgaaattgtttacaattcgtgataacgggtcatctgaagaacagtc 3410 Query: 106 tttcggtttacttagctttatggcggattgaggataatcgaccggaatgttgaaaacaca 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3409 tttcggtttacttagctttatggcggattgaggataatcgaccggaatgttgaaaacaca 3350 Query: 166 tttcactttcttttgattctgatcttgatcagtggtaataaacgttagcgagtaggtttt 225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 3349 tttcactttcttttgattctgatcttgatcagtggtaataaacgttagcgagtaggtcgt 3290 Query: 226 gacatattgtcctttccttaacattacaatatctgacccagccaaatggcacaattggtc 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3289 gacatattgtcctttccttaacattacaatatctgacccagccaaatggcacaattggtc 3230 Query: 286 aatttcggcttttctttgcaacttcaaggcatttctcaatttgaattttttctctgcatt 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3229 aatttcggcttttctttgcaacttcaaggcatttctcaatttgaattttttctctgcatt 3170 Query: 346 ttcattatgggatgatttggcggtaatttcaagactggttgccttctctgcaggtactga 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3169 ttcattatgggatgatttggcggtaatttcaagactggttgccttctctgcaggtactga 3110 Query: 406 tttttctgcctttgaccgtctccctctcttcctcctataactatgtccagcattttttct 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3109 tttttctgcctttgaccgtctccctctcttcctcctataactatgtccagcattttttct 3050 Query: 466 cttgtcagcttcactctctttcgtatgtttaattacgccattctcaacttttcctgcagc 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3049 cttgtcagcttcactctctttcgtatgtttaattacgccattctcaacttttcctgcagc 2990 Query: 526 tttcgcagacatgatggtaacccgattgcttggcctgatatttagaatctctcaaaataa 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2989 tttcgcagacatgatggtaacccgattgcttggcctgatatttagaatctctcaaaataa 2930 Query: 586 tatctaccgagcagagtacgctgaaacggttgagataccaatggttatatagcttaagtt 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2929 tatctaccgagcagagtacgctgaaacggttgagataccaatggttatatagcttaagtt 2870 Query: 646 ctttttcatagctccctcattctctataaactgatctcatctcatatttcattaacttac 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2869 ctttttcatagctccctcattctctataaactgatctcatctcatatttcattaacttac 2810 Query: 706 catgtctactgcctaaatgcataaagtttcagttttttttcacaaaattggtacctgatt 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2809 catgtctactgcctaaatgcataaagtttcagttttttttcacaaaattggtacctgatt 2750 Query: 766 gttgtagaaaaaacgtgaccagagttgcgacactgcctcaatgaataccgactcattcct 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2749 gttgtagaaaaaacgtgaccagagttgcgacactgcctcaatgaataccgactcattcct 2690 Query: 826 gaa-gcatcngataaagaaacatatagtcattggcggtcaatttttgga-atttgaaagt 883 ||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 2689 gaaggcatcgaataaagaaacatatagtcattggcggtcaatttctggagatttgaaagt 2630 Query: 884 gaattcaatctatcaaacttgatatt 909 |||||||||||||||||||||||||| Sbjct: 2629 gaattcaatctatcaaacttgatatt 2604 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8819 Number of Sequences: 1807 Number of extensions: 8819 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 1003 length of database: 10,358,551 effective HSP length: 16 effective length of query: 987 effective length of database: 10,329,639 effective search space: 10195353693 effective search space used: 10195353693 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)