BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZH11RM1.SCF screened BAC_end
         (1003 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1063                                                        1639   0.0  

>3x_Contig1063 
          Length = 5012

 Score = 1639 bits (827), Expect = 0.0
 Identities = 858/866 (99%), Gaps = 2/866 (0%)
 Strand = Plus / Minus

                                                                        
Query: 46   ttttgatttataattgaaattgtttacaattcgtgataacgggtcatctcaagaacagtc 105
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3469 ttttgatttataattgaaattgtttacaattcgtgataacgggtcatctgaagaacagtc 3410

                                                                        
Query: 106  tttcggtttacttagctttatggcggattgaggataatcgaccggaatgttgaaaacaca 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3409 tttcggtttacttagctttatggcggattgaggataatcgaccggaatgttgaaaacaca 3350

                                                                        
Query: 166  tttcactttcttttgattctgatcttgatcagtggtaataaacgttagcgagtaggtttt 225
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 3349 tttcactttcttttgattctgatcttgatcagtggtaataaacgttagcgagtaggtcgt 3290

                                                                        
Query: 226  gacatattgtcctttccttaacattacaatatctgacccagccaaatggcacaattggtc 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3289 gacatattgtcctttccttaacattacaatatctgacccagccaaatggcacaattggtc 3230

                                                                        
Query: 286  aatttcggcttttctttgcaacttcaaggcatttctcaatttgaattttttctctgcatt 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3229 aatttcggcttttctttgcaacttcaaggcatttctcaatttgaattttttctctgcatt 3170

                                                                        
Query: 346  ttcattatgggatgatttggcggtaatttcaagactggttgccttctctgcaggtactga 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3169 ttcattatgggatgatttggcggtaatttcaagactggttgccttctctgcaggtactga 3110

                                                                        
Query: 406  tttttctgcctttgaccgtctccctctcttcctcctataactatgtccagcattttttct 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3109 tttttctgcctttgaccgtctccctctcttcctcctataactatgtccagcattttttct 3050

                                                                        
Query: 466  cttgtcagcttcactctctttcgtatgtttaattacgccattctcaacttttcctgcagc 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 cttgtcagcttcactctctttcgtatgtttaattacgccattctcaacttttcctgcagc 2990

                                                                        
Query: 526  tttcgcagacatgatggtaacccgattgcttggcctgatatttagaatctctcaaaataa 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 tttcgcagacatgatggtaacccgattgcttggcctgatatttagaatctctcaaaataa 2930

                                                                        
Query: 586  tatctaccgagcagagtacgctgaaacggttgagataccaatggttatatagcttaagtt 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 tatctaccgagcagagtacgctgaaacggttgagataccaatggttatatagcttaagtt 2870

                                                                        
Query: 646  ctttttcatagctccctcattctctataaactgatctcatctcatatttcattaacttac 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 ctttttcatagctccctcattctctataaactgatctcatctcatatttcattaacttac 2810

                                                                        
Query: 706  catgtctactgcctaaatgcataaagtttcagttttttttcacaaaattggtacctgatt 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2809 catgtctactgcctaaatgcataaagtttcagttttttttcacaaaattggtacctgatt 2750

                                                                        
Query: 766  gttgtagaaaaaacgtgaccagagttgcgacactgcctcaatgaataccgactcattcct 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2749 gttgtagaaaaaacgtgaccagagttgcgacactgcctcaatgaataccgactcattcct 2690

                                                                        
Query: 826  gaa-gcatcngataaagaaacatatagtcattggcggtcaatttttgga-atttgaaagt 883
            ||| |||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 2689 gaaggcatcgaataaagaaacatatagtcattggcggtcaatttctggagatttgaaagt 2630

                                      
Query: 884  gaattcaatctatcaaacttgatatt 909
            ||||||||||||||||||||||||||
Sbjct: 2629 gaattcaatctatcaaacttgatatt 2604


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8819
Number of Sequences: 1807
Number of extensions: 8819
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)